PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG382700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 341aa    MW: 35115.1 Da    PI: 8.4236
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG382700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.5e-20215249135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C+nCgt++TplWR+gp+g+k+LCnaCG++++k+++
  Pavir.1NG382700.1.p 215 CANCGTSSTPLWRNGPRGPKSLCNACGIRFKKEER 249
                          ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.1E-18209259IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-14211250No hitNo description
Gene3DG3DSA:3.30.50.102.1E-17213249IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011413.929213245IPR000679Zinc finger, GATA-type
CDDcd002029.21E-14214246No hitNo description
PfamPF003205.0E-18215249IPR000679Zinc finger, GATA-type
PROSITE patternPS003440215240IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDVTFHDESN GVRERRVLRD KCEAGIAAAS GSASTSRSVA SSLTGHCARH RIHSASTRTV  60
ASLRTMLRHC TGSSHQSVAA APGTMASTTF SLFFPPPEAQ WPAADEAAAF DDDRSSITTS  120
PSSPSSASSA GSVDCTLSLG TPSSRRAAAA AAAADRAELA KRAALPAYPS ASASPVSWDA  180
AADQSYYCCQ ASKTGAAKVA AARAEHDPLL MDRRCANCGT SSTPLWRNGP RGPKSLCNAC  240
GIRFKKEERR AAATAAMDPH QGAYGYAAQR AQYGYGPAGK QAPGAVPCYG EGAFPCGGGD  300
VADAAEAPFL AWRLNVVAPA PAPAPAFAVW PERAGLFQYN *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000250|UniProtKB:Q6L5E5}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG382700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9678509e-56EU967850.1 Zea mays clone 306547 GATA transcription factor 19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810273.11e-115GATA transcription factor 15-like
SwissprotB8AX513e-62GAT15_ORYSI; GATA transcription factor 15
TrEMBLA0A3L6R8D01e-123A0A3L6R8D0_PANMI; GATA transcription factor 19-like
STRINGPavir.J18346.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.11e-20GATA transcription factor 19