PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG373800.9.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Trihelix | ||||||||
Protein Properties | Length: 649aa MW: 68957.2 Da PI: 6.07 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 90.9 | 1.4e-28 | 97 | 181 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laLi +r+em+ ++r++ lk+plWe+v++k++ g++rs+k+Ckek+en+ k+y+++k+ + +r++++ ++++f qlea Pavir.1NG373800.9.p 97 RWPREETLALIGIRTEMDADFRNAPLKAPLWEDVARKLAGLGYRRSAKKCKEKFENVDKYYRRTKDARAGRQDGR--SYRFFAQLEA 181 8*********************************************************************86555..5******985 PP | |||||||
2 | trihelix | 104.6 | 6.9e-33 | 414 | 499 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+ev+aLi++r+e++e++ ++ +++ We+++++mr+ g++rs+k+Ckekwen+nk+ykk+ke++k+r +e+s+tcpyf+ql+a Pavir.1NG373800.9.p 414 RWPKEEVQALIQLRTEKDEQYHDTGGRGHVWEDIAAAMRRIGYNRSAKRCKEKWENINKYYKKVKESNKRR-PEDSKTCPYFHQLDA 499 8********************************************************************97.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.81 | 94 | 156 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 2.2E-19 | 96 | 182 | No hit | No description |
CDD | cd12203 | 8.54E-27 | 97 | 161 | No hit | No description |
PROSITE profile | PS50090 | 6.748 | 97 | 154 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.0E-4 | 411 | 473 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.19E-5 | 412 | 482 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.979 | 413 | 471 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-5 | 413 | 470 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 6.51E-28 | 413 | 478 | No hit | No description |
Pfam | PF13837 | 1.3E-23 | 414 | 500 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 649 aa Download sequence Send to blast |
MLHHHGGAGS PYMAPTTAGT DPFSPTPTGP ASVAAIIPPP PMVLQAAAAG TTRGNFEELP 60 AGGPSAAAAA GLQDDDLPAD VVGAGGAGAS GSGGGHRWPR EETLALIGIR TEMDADFRNA 120 PLKAPLWEDV ARKLAGLGYR RSAKKCKEKF ENVDKYYRRT KDARAGRQDG RSYRFFAQLE 180 ALHAAAQRQA TGMAAAARGD HQPSATMAWT AAPAEVAGPP AGAGLPDLSF SSMSGSGSES 240 ESDDDLDEGV AGPDKGESGG GGGDDGEMMA IFEGMMRQVT EKQDAMQRVF LDTLERWEAE 300 RTAREEAWRR QEVARMHRER EQLARERAAA ASRDAALMAF LQRVGGGQQG EPVRLPPPVA 360 VALPMPDRTS PSHRHDAAGQ ATSLQPVPAA APPKTEEARA WAGDEGRGGS MPSRWPKEEV 420 QALIQLRTEK DEQYHDTGGR GHVWEDIAAA MRRIGYNRSA KRCKEKWENI NKYYKKVKES 480 NKRRPEDSKT CPYFHQLDAM HRKKRFAGGG SSAAPGAYKA AGAGAGAVTL QEKPNLRELE 540 GESSNDADRL RNDGQGNVHA PPRPGNGETA PTTTENKTAD ETESDDNDMG GDYTEESNDE 600 DQMKYKMAFQ KPNVIGSSGN NAAPAPPATA AAPTSSAAPT SSTFLAVQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG373800.9.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798824.1 | 0.0 | trihelix transcription factor GTL1-like isoform X1 | ||||
TrEMBL | A0A2T7F9Q0 | 0.0 | A0A2T7F9Q0_9POAL; Uncharacterized protein | ||||
STRING | Si016578m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 3e-41 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG373800.9.p |