PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG373800.15.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 387aa    MW: 41743.1 Da    PI: 6.4426
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG373800.15.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix105.83.1e-33222307187
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                           rW+k+ev+aLi++r+e++e++ ++  +++ We+++++mr+ g++rs+k+Ckekwen+nk+ykk+ke++k+r +e+s+tcpyf+ql+a
  Pavir.1NG373800.15.p 222 RWPKEEVQALIQLRTEKDEQYHDTGGRGHVWEDIAAAMRRIGYNRSAKRCKEKWENINKYYKKVKESNKRR-PEDSKTCPYFHQLDA 307
                           8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.0E-4219281IPR001005SANT/Myb domain
SuperFamilySSF466898.96E-6220290IPR009057Homeodomain-like
PROSITE profilePS500907.979221279IPR017877Myb-like domain
CDDcd122037.50E-28221286No hitNo description
Gene3DG3DSA:1.10.10.609.1E-6221279IPR009057Homeodomain-like
PfamPF138375.6E-24222308No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MAAAARGDHQ PSATMAWTAA PAEVAGPPAG AGLPDLSFSS MSGSGSESES DDDLDEGVAG  60
PDKGESGGGG GDDGEMMAIF EGMMRQVTEK QDAMQRVFLD TLERWEAERT AREEAWRRQE  120
VARMHREREQ LARERAAAAS RDAALMAFLQ RVGGGQQGEP VRLPPPVAVA LPMPDRTSPS  180
HRHDAAGQAT SLQPVPAAAP PKTEEARAWA GDEGRGGSMP SRWPKEEVQA LIQLRTEKDE  240
QYHDTGGRGH VWEDIAAAMR RIGYNRSAKR CKEKWENINK YYKKVKESNK RRPEDSKTCP  300
YFHQLDAMHR KKRFAGGGSS AAPGAYKAAG AGAGAVTLQE KPNLRELEGE SSNDADRLRN  360
DGQGNVHAPP RPGNGETAPT TTENKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG373800.15.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798832.10.0trihelix transcription factor GTL1-like isoform X2
TrEMBLA0A2T7F9Q70.0A0A2T7F9Q7_9POAL; Uncharacterized protein
STRINGPavir.J25029.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-43Trihelix family protein