|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.1NG351000.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
MYB |
Protein Properties |
Length: 282aa MW: 31915.4 Da PI: 6.3634 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.1NG351000.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 63.1 | 5.5e-20 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT++Ed+llv++v+q+G g+W+++a+ g++R++k+c++rw +yl
Pavir.1NG351000.1.p 16 KGPWTAQEDKLLVEYVRQHGEGRWNSVAKLTGLKRSGKSCRLRWVNYL 63
79********************************************97 PP
|
2 | Myb_DNA-binding | 51 | 3.4e-16 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+ T++E+ ++++++++G++ W+tIar ++ gRt++++k++w+++
Pavir.1NG351000.1.p 69 RGKITPQEESVILELHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 113
8999******************.*********.************97 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 282 aa
Download sequence Send
to blast |
MEGQFGWGRE EGGWRKGPWT AQEDKLLVEY VRQHGEGRWN SVAKLTGLKR SGKSCRLRWV 60 NYLRPDLKRG KITPQEESVI LELHALWGNR WSTIARSLPG RTDNEIKNYW RTHFKKGKPS 120 KNIERARARF LKQRREMQSQ LQQQQQQQGQ DQQQRQRQQA GDGHDDGAVI REASSSPAVS 180 LARQDEEDLQ MLQQDMDDLL FQFCCPMASC ASSSCCLLPG ATASASEEGS SWDHPQLDGG 240 ATWGWGSLWN LDDVVDDVDG GACGGWDTSF PWLQEQGLAF Y*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AK099283 | 1e-145 | AK099283.1 Oryza sativa Japonica Group cDNA clone:J023132O17, full insert sequence. |
GenBank | AK111807 | 1e-145 | AK111807.1 Oryza sativa Japonica Group cDNA clone:J013104N22, full insert sequence. |