PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

CO-like

Protein Properties

Length: 335aa MW: 35053.1 Da PI: 5.025

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1NG342600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.5	1.1e-07	22	59	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 r C+ + ++++l+C+ ++ +lC+ C H g H Pavir.1NG342600.1.p 22 RPCDACAAEPARLHCRADGAFLCPGCDARAH-GagsrHA 59 68**************************999.4466675 PP
2	zf-B_box	22.9	1.7e-07	61	105	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 + C+ +e+ ++ C+ + lC+ C +H+ H++ p Pavir.1NG342600.1.p 61 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 105 679*****************************6688888898877 PP
3	CCT	70.3	5e-24	253	295	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+l+RY+eKrk+R+F+K+irY+sRKa+Ae+RpR+KGrF+k+ Pavir.1NG342600.1.p 253 REARLMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRFAKR 295 9****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	3.0E-5	19	63	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.769	19	63	IPR000315	B-box-type zinc finger
Pfam	PF00643	8.3E-6	22	59	IPR000315	B-box-type zinc finger
CDD	cd00021	4.12E-7	22	63	No hit	No description
PROSITE profile	PS50119	10.424	59	106	IPR000315	B-box-type zinc finger
Pfam	PF00643	7.9E-6	61	106	IPR000315	B-box-type zinc finger
SMART	SM00336	4.6E-9	64	106	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	16.916	253	295	IPR010402	CCT domain
Pfam	PF06203	3.0E-18	253	295	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MAAAVELEQK PAVGYWGVAG ARPCDACAAE PARLHCRADG AFLCPGCDAR AHGAGSRHAR 60 VWLCEVCEHA PAAVTCRADA AALCAACDAD IHSANPLARR HERLPVAPFF GALADAPQPF 120 PSAAFATAGG QSQGDAAAAA AADDDGSNEA EAASWLLPEP DTSHEDSAAA TDAFFADSDK 180 YLGVDLDFAR SMDGIKAIGV PVAPPELDIA AGAFYYPEHS MNHSVSSSEV AVVPDVLAGG 240 VPAVPVASRG KEREARLMRY REKRKNRRFD KTIRYASRKA YAETRPRIKG RFAKRCSAEA 300 EDEDEALLEH EEGACFSPAV SAPAASDGVV PSFC*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.4183	0.0	callus\| leaf\| root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1NG342600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU956239	0.0	EU956239.1 Zea mays clone 1559496 CONSTANS-like protein CO5 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811633.1	0.0	zinc finger protein CONSTANS-LIKE 3-like
Swissprot	Q9FHH8	2e-72	COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBL	A0A2T7F8U3	0.0	A0A2T7F8U3_9POAL; Uncharacterized protein
STRING	Pavir.Aa01385.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2191	32	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24790.1	3e-40	CONSTANS-like 3

Link Out ? help Back to Top
Phytozome	Pavir.1NG342600.1.p

Publications ? help Back to Top
Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518]