PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG336200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 815aa    MW: 92176.7 Da    PI: 8.9681
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG336200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.73.3e-1753136190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fY++YA++vGF v++++s+ s ++g++   +++C k g+++ e k      r+ra++ t+C ak++vk++ d+  +v+   l+HnH+++
  Pavir.1NG336200.1.p  53 RFYRKYARRVGFGVSVRRSSFS-QEGTCLYLELMCCKGGRPRYEPKF-----RKRASSTTNCPAKIRVKLWGDKLLHVELAILDHNHPVS 136
                          5*****************9999.6677****************9988.....99*********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-1553137IPR004330FAR1 DNA binding domain
PfamPF105511.0E-28256349IPR018289MULE transposase domain
PROSITE profilePS509668.951543579IPR007527Zinc finger, SWIM-type
PfamPF044344.4E-5548572IPR007527Zinc finger, SWIM-type
SMARTSM005756.7E-4554581IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    Send to blast
MEVEEPFPQT KNPRRARRRD LNALDPSMEE SDGEDIGVPE VGMVFNNHTE VNRFYRKYAR  60
RVGFGVSVRR SSFSQEGTCL YLELMCCKGG RPRYEPKFRK RASSTTNCPA KIRVKLWGDK  120
LLHVELAILD HNHPVSPAMA RFLNSYKQLS GPAKRRLRMG GPGAMPVEEP SKMPMDKLGE  180
LEELLFGESK HHSFVERGRL KLQPGDSEAL RLFFTRMQAK NANFFNVTDL DDEGCIRNVF  240
WADARSRSMY EYYSDVITLD TSYVVSKHDM PLATFIGVNH HGQSVLIGCA LLSDETAETY  300
SWLLKAWIAC MSGNLPKAIV TDYCRGIQSA VAEVIPGVRH RMCLFQIMRK AAERFSGLSE  360
YRAINKAMHK AVYDSLTIDE FEGEWNTLIS FNGIQGNDWL RSLYECRASW VPVFIKDTFW  420
AGMSVTQRNE TITPFFDGYV DLKTTLKQFL GKYEMALQSK YEKEAQADFE TFHKQRPPVS  480
KFYMEEQLSK VYTHNMFKKF QDEVEAIMYC HVSLIAVDGP VSTFNVKECI FLEDGRRTMS  540
KIFAVTYNAD EKDITCICGG FQFSGILCRH SLSMLKFQLV REIPPQYILD RWKKDFRQLH  600
VMGRPPSDLV PSNRVDRYDY LSMRCLQLVD SAVLSDKYCL ALRLVREMEK FLLNSNTHDD  660
TQPRIKSRVP KVNKPNTATG QNVVDAATDN GHVGSKAPKA PAVMQASQIQ KGGAERGILP  720
AGYIGVPANV QQFVANQAAI RPSIVYMVPS GVDPHAFGNG VLMPVMYQQM FQVPQKLNGT  780
VQDTSANGKK KRPRGQKLTE TSQQSNGTPG PSSG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.167620.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG336200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828723.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A2T7F8T60.0A0A2T7F8T6_9POAL; Uncharacterized protein
STRINGPavir.Aa01402.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-137FAR1-related sequence 6