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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG336200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 815aa MW: 92176.7 Da PI: 8.9681 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 54.7 | 3.3e-17 | 53 | 136 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA++vGF v++++s+ s ++g++ +++C k g+++ e k r+ra++ t+C ak++vk++ d+ +v+ l+HnH+++ Pavir.1NG336200.1.p 53 RFYRKYARRVGFGVSVRRSSFS-QEGTCLYLELMCCKGGRPRYEPKF-----RKRASSTTNCPAKIRVKLWGDKLLHVELAILDHNHPVS 136 5*****************9999.6677****************9988.....99*********************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-15 | 53 | 137 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.0E-28 | 256 | 349 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 8.951 | 543 | 579 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 4.4E-5 | 548 | 572 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 6.7E-4 | 554 | 581 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 815 aa Download sequence Send to blast |
MEVEEPFPQT KNPRRARRRD LNALDPSMEE SDGEDIGVPE VGMVFNNHTE VNRFYRKYAR 60 RVGFGVSVRR SSFSQEGTCL YLELMCCKGG RPRYEPKFRK RASSTTNCPA KIRVKLWGDK 120 LLHVELAILD HNHPVSPAMA RFLNSYKQLS GPAKRRLRMG GPGAMPVEEP SKMPMDKLGE 180 LEELLFGESK HHSFVERGRL KLQPGDSEAL RLFFTRMQAK NANFFNVTDL DDEGCIRNVF 240 WADARSRSMY EYYSDVITLD TSYVVSKHDM PLATFIGVNH HGQSVLIGCA LLSDETAETY 300 SWLLKAWIAC MSGNLPKAIV TDYCRGIQSA VAEVIPGVRH RMCLFQIMRK AAERFSGLSE 360 YRAINKAMHK AVYDSLTIDE FEGEWNTLIS FNGIQGNDWL RSLYECRASW VPVFIKDTFW 420 AGMSVTQRNE TITPFFDGYV DLKTTLKQFL GKYEMALQSK YEKEAQADFE TFHKQRPPVS 480 KFYMEEQLSK VYTHNMFKKF QDEVEAIMYC HVSLIAVDGP VSTFNVKECI FLEDGRRTMS 540 KIFAVTYNAD EKDITCICGG FQFSGILCRH SLSMLKFQLV REIPPQYILD RWKKDFRQLH 600 VMGRPPSDLV PSNRVDRYDY LSMRCLQLVD SAVLSDKYCL ALRLVREMEK FLLNSNTHDD 660 TQPRIKSRVP KVNKPNTATG QNVVDAATDN GHVGSKAPKA PAVMQASQIQ KGGAERGILP 720 AGYIGVPANV QQFVANQAAI RPSIVYMVPS GVDPHAFGNG VLMPVMYQQM FQVPQKLNGT 780 VQDTSANGKK KRPRGQKLTE TSQQSNGTPG PSSG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.16762 | 0.0 | callus| leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG336200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828723.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like | ||||
TrEMBL | A0A2T7F8T6 | 0.0 | A0A2T7F8T6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa01402.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 1e-137 | FAR1-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG336200.1.p |