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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.1NG327300.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
ERF |
Protein Properties |
Length: 284aa MW: 30453.2 Da PI: 7.3329 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.1NG327300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 56.5 | 6.6e-18 | 41 | 91 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
+y+GVr+++ +gr++AeIrdp + r +lg+f+tae+Aa a++aa+++++g+
Pavir.1NG327300.1.p 41 RYRGVRRRP-WGRFAAEIRDPM----SkERRWLGTFDTAEQAACAYDAAARAMRGN 91
69*******.**********84....35999**********************995 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 284 aa
Download sequence Send
to blast |
MEDAGHVHHY AHAHHLHRSK RPPAAIMDED ADGDALPKGA RYRGVRRRPW GRFAAEIRDP 60 MSKERRWLGT FDTAEQAACA YDAAARAMRG NKARTNFPGH VAAGYWPWAA PPPATRNPFL 120 LHNLIMSSSP HHGLRLLHHA GHCHVVSPAP SRPPAPDAAT MPAPSPVAPP PAALDDEDAG 180 DWGDLMRGEP ADAGLLQDAL HGFYPAGTRP RAGASGNLLA AGGGGRAAVP IKQERHDAFI 240 DVDEEDEYPM MPQGLLGDVI QYPAFVEAFV AAPSAPTRRG RRG*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU954877 | 5e-97 | EU954877.1 Zea mays clone 1489895 AP2 domain containing protein mRNA, complete cds. |