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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pavir.1NG305200.2.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 370aa MW: 40345.7 Da PI: 8.8924 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.1NG305200.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.7 | 4.8e-19 | 205 | 259 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Le++F+++++++ +++ +LAkkl+L rqV vWFqNrRa+ k
Pavir.1NG305200.2.p 205 RKKLRLSKEQSAFLEDCFKEHSTLTPKQKSDLAKKLNLRPRQVEVWFQNRRARTK 259
678899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 123.8 | 8.3e-40 | 205 | 294 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
+kk+rlskeq+++LE++F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+ +e+Lkr++++l++en+rL++ev+eLr +
Pavir.1NG305200.2.p 205 RKKLRLSKEQSAFLEDCFKEHSTLTPKQKSDLAKKLNLRPRQVEVWFQNRRARTKLKQTEVGCEYLKRCCETLAQENRRLHREVAELR-A 293
69*************************************************************************************9.5 PP
HD-ZIP_I/II 91 l 91
l
Pavir.1NG305200.2.p 294 L 294
5 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 370 aa
Download sequence Send
to blast |
MPDNHSGTST AMPIFRFYYF KLNTSELIPL LAGPTRLCRP IKRSFLRPKT HSWRVHRGGR 60
IGAPPPCPAA DQSIPASAPP RRPPASPSTP PSSPSDPAAP LVLLAAGKEY HELLLELGVG 120
TARRTGQDNQ RTPTQPGEDA QDQEDDGEAC FRIESPVELS LGCRLLPASA ETGSANSEEC 180
RRGFEAADLE GAEDEENSGV GGGVRKKLRL SKEQSAFLED CFKEHSTLTP KQKSDLAKKL 240
NLRPRQVEVW FQNRRARTKL KQTEVGCEYL KRCCETLAQE NRRLHREVAE LRALRTAPYP 300
FYGHLPAAGF STARMCPSCD AKVITAHHPS ITPTSPAVAP PSPVSTSFAR PHFGPFTVVH 360
PRAPPPATS*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 253 | 261 | RRARTKLKQ |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
