 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.1NG305200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 399aa MW: 43399.1 Da PI: 8.7543 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.1NG305200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.5 | 5.4e-19 | 234 | 288 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Le++F+++++++ +++ +LAkkl+L rqV vWFqNrRa+ k
Pavir.1NG305200.1.p 234 RKKLRLSKEQSAFLEDCFKEHSTLTPKQKSDLAKKLNLRPRQVEVWFQNRRARTK 288
678899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 123.6 | 9.4e-40 | 234 | 323 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
+kk+rlskeq+++LE++F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+ +e+Lkr++++l++en+rL++ev+eLr +
Pavir.1NG305200.1.p 234 RKKLRLSKEQSAFLEDCFKEHSTLTPKQKSDLAKKLNLRPRQVEVWFQNRRARTKLKQTEVGCEYLKRCCETLAQENRRLHREVAELR-A 322
69*************************************************************************************9.5 PP
HD-ZIP_I/II 91 l 91
l
Pavir.1NG305200.1.p 323 L 323
5 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 399 aa
Download sequence Send
to blast |
MPDNHSGTST AMPIFRFYYF KLNTSELIPL LAGPTRLCRP IKRSFLRPKT HSWRVHRGGR 60
IGAPPPCPAA DQSIPASAPP RRPPASPSTP PSSPSDPAAP LVLLAAGKEY HELLLELGVG 120
TARRTGQDNQ RTPTQPGEDA QDQEDDGEAC FRIESPVELS LGCRLLPASA ETGSANSEEC 180
RRGFEVNTVV VDGESVQGRS LSTSSLPMEV PVRQAADLEG AEDEENSGVG GGVRKKLRLS 240
KEQSAFLEDC FKEHSTLTPK QKSDLAKKLN LRPRQVEVWF QNRRARTKLK QTEVGCEYLK 300
RCCETLAQEN RRLHREVAEL RALRTAPYPF YGHLPAAGFS TARMCPSCDA KVITAHHPSI 360
TPTSPAVAPP SPVSTSFARP HFGPFTVVHP RAPPPATS*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 282 | 290 | RRARTKLKQ |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
