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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.1NG304200.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
Trihelix |
Protein Properties |
Length: 389aa MW: 41887.4 Da PI: 8.219 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.1NG304200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 48.1 | 3.1e-15 | 59 | 140 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
W++ + +Li+a e+ +l+rg+l+ p+W+ev++++ ++ g+ rs +qCk++++ l+k+yk +k+ + + ++pyfd+l+
Pavir.1NG304200.1.p 59 WSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYskgPRSDIQCKNRIDTLKKKYKVEKAKRAS-------SWPYFDRLD 140
*************************************87788833346779***************9999886.......5******98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 389 aa
Download sequence Send
to blast |
MDEDGAASPS PSPSPSRSPS PLPVADPVTV AAAPPGHVAV AIPLCRPSPS SGGGREDAWS 60 DGATSTLIDA WGERFVALGR GSLRHPQWQE VAEVVSSRDG YSKGPRSDIQ CKNRIDTLKK 120 KYKVEKAKRA SSWPYFDRLD ELLAPVYKPN SSSSSAARSA PLPMVPPRIN FPQRTRTPLQ 180 PPAGAKRRMP SPPPQASASS DSSDGFPPEP LSALANGKRR RLEEPTPASA AVNGAESSSS 240 RRVQGLRDLA QAIRRLGEVY QRVESAKREQ ELRMEQERLE AARELEEQRV EFFLKMQMEL 300 SKATGSGSAA PAAIPIPADG NGTRRTGMTA EVATSSNHRV RYRIKGSMHH QAAQQPHYQN 360 NAASGGNGSD SDNKEAEEDA EDEEEESQ*
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G11100.1 | 1e-31 | sequence-specific DNA binding transcription factors |