PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 372aa MW: 37525.5 Da PI: 8.4779

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1NG303700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.8	1.2e-38	77	138	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 keka +cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Pavir.1NG303700.1.p 77 KEKAPNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 138 678899****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-26	71	126	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-32	79	135	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.658	81	135	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	83	119	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MDAAQWHQGL GLGKPMEEML MAGNTNPNQN PNPPPAAPSA APGSQRPSGA PAADAAAPGA 60 GAAGAGAGTE RRARPQKEKA PNCPRCNSTN TKFCYYNNYS LQQPRYFCKT CRRYWTEGGS 120 LRNVPVGGGS RKNKRSSSAV SSAAAAAVST SAAVSGTIPV GLAAKNPKLM HEGAHDLNLA 180 FPHHNGRGLQ PPEFAAFPSL ESSSVCNPGA TMAGNGGAAG RGVGALSAME LLRSTGCYVP 240 LQHVQLGMPA EYAAAGFALG DFRMPPPPQS QSLLGFSLDT HGTGAGGYSA GLQGVQDSAA 300 GRLLFPFEDL KPAVTAAGAA TNNGADQYEH SKDQAGDGSG ASGVTGGHEA HGFWSNSILG 360 NGSSNGGGGP W*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MDAAQWHQGL GLGKPMEEML MAGNTNPNQN PNPPPAAPSA APGSQRPSGA PAADAAAPGA  60
GAAGAGAGTE RRARPQKEKA PNCPRCNSTN TKFCYYNNYS LQQPRYFCKT CRRYWTEGGS  120
LRNVPVGGGS RKNKRSSSAV SSAAAAAVST SAAVSGTIPV GLAAKNPKLM HEGAHDLNLA  180
FPHHNGRGLQ PPEFAAFPSL ESSSVCNPGA TMAGNGGAAG RGVGALSAME LLRSTGCYVP  240
LQHVQLGMPA EYAAAGFALG DFRMPPPPQS QSLLGFSLDT HGTGAGGYSA GLQGVQDSAA  300
GRLLFPFEDL KPAVTAAGAA TNNGADQYEH SKDQAGDGSG ASGVTGGHEA HGFWSNSILG  360
NGSSNGGGGP W*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.4143	0.0	leaf\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in germinating seeds 3 to 5 days after imbibition. {ECO:0000269\|PubMed:11470159}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1NG303700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU954652	0.0	EU954652.1 Zea mays clone 1475494 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826520.1	0.0	dof zinc finger protein 2-like isoform X1
Swissprot	B9F1L8	1e-133	DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBL	A0A2T7FAC1	0.0	A0A2T7FAC1_9POAL; Uncharacterized protein
STRING	Pavir.Aa00902.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	6e-36	Dof family protein

Link Out ? help Back to Top
Phytozome	Pavir.1NG303700.1.p

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]