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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG299700.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 1050aa MW: 117078 Da PI: 8.0312 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 52.9 | 1.3e-16 | 405 | 484 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +f+n Y+ e+GF +r +s+k+ ++g +t+++ vCs+eg++++++ + + rtgCk ++++ +++d+ w+++++++ HnH+l+ Pavir.1NG299700.4.p 405 DFFNLYSWEIGFGIRYGRSNKN-NKGYTTRQDIVCSCEGSPRTKNCA---------SIRTGCKVMIRLLRTSDHGWYISRVSTSHNHKLS 484 6********************9.7788*************9987665.........9*******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.8E-13 | 405 | 484 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.5E-17 | 602 | 670 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 2.1E-4 | 859 | 893 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 10.002 | 859 | 894 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.9E-4 | 869 | 896 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1050 aa Download sequence Send to blast |
MAEPVKETIA PPPPPREAET MDGGPAAAAA AETADLVPRT SEPAALAVVA PGEETTTTTP 60 PPPPQEAEPT DGVASALDPA LPTAEPARRA PPQEKPDAAA GQPQPPTPTK AEEVAALPPP 120 SERPSQERVA AAVEAEKQVK QQPATPVPAP PQQQQPPQEQ EGGAPEQASS VQEEEKNAAP 180 ARAQEGQEEL ARRRWRWLRA AVNLLFLRPK RKDKDSAAAK PPAPGGKPAV SGLEDKKTTP 240 ADKLHGEDSA GGVLDKPEVK QKDEGEGSKG RMFWCPMADV PTPIDGQVSP EQEGIMNIDL 300 DLGVAEMIRD KFVGVDSGQI EGNGQEGGEA GAEEVELALE AGNVITERRI GWTRKSAREG 360 PSERIAVNEE SAITRALSQA ARNRGSPIFQ PLEGTLFSSS EEARDFFNLY SWEIGFGIRY 420 GRSNKNNKGY TTRQDIVCSC EGSPRTKNCA SIRTGCKVMI RLLRTSDHGW YISRVSTSHN 480 HKLSEGYAEK KQWNSHSMID PSTKYFIKKL RDNNVSIGRV CSIIGVTDSS AMNPVRKETI 540 RSLCAKVARE NMADDIGKTV QLLREMKIKD PLMEVRFKVD EKGTVKSMLW CTGKNRMDYK 600 NFGDSIIFGG VLLSTETAED FQWAFQNFIE MMDGSVPITV LTDQCAAMGK AIRTVLPGTR 660 HRWCRWHVLK SAKKKLGKVI ARHNQFKIDF YNLITNETCV DSFELSWKKL IIKYRLVKSK 720 YMLRLYKHRE KWAKPYFMSV FCAGMTSTQR SESANHMLKR YIQKAAPMHL FVSKFNEFLC 780 DRTEQEAREQ HVTKMVTRRM RVGAPIEEHA DLVYTRAMYE KFYDELFEAG KFCVQREDGN 840 DRFIVSSAKL SSDGVQKKYV VTLHGEDFMS CQCGLYEHLG MLCRHALKVL LHLDRQEIPK 900 FNIMRRWTKE AVVYKAHGEQ TDIASDADQM RKKALMLQTL QIVHGPSPVD EQMFRNAMEA 960 LRPADRTQRE DPPFDGQYQC SLHDDAGPVP LSCPPRTMKG GRPPSTGLNA WISRKDKRTL 1020 DSSPRDPISE DWPEEEMPPS KKTRCLKDI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG299700.4.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243236 | 1e-153 | AC243236.1 Panicum virgatum clone PV_ABa020-H10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021310926.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | A0A1B6Q0S6 | 0.0 | A0A1B6Q0S6_SORBI; Uncharacterized protein | ||||
STRING | Pavir.J10053.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 6e-60 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG299700.4.p |