PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG299700.4.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 1050aa    MW: 117078 Da    PI: 8.0312
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG299700.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.91.3e-16405484190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +f+n Y+ e+GF +r  +s+k+ ++g +t+++ vCs+eg++++++ +         + rtgCk ++++ +++d+ w+++++++ HnH+l+
  Pavir.1NG299700.4.p 405 DFFNLYSWEIGFGIRYGRSNKN-NKGYTTRQDIVCSCEGSPRTKNCA---------SIRTGCKVMIRLLRTSDHGWYISRVSTSHNHKLS 484
                          6********************9.7788*************9987665.........9*******************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.8E-13405484IPR004330FAR1 DNA binding domain
PfamPF105512.5E-17602670IPR018289MULE transposase domain
PfamPF044342.1E-4859893IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.002859894IPR007527Zinc finger, SWIM-type
SMARTSM005751.9E-4869896IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1050 aa     Download sequence    Send to blast
MAEPVKETIA PPPPPREAET MDGGPAAAAA AETADLVPRT SEPAALAVVA PGEETTTTTP  60
PPPPQEAEPT DGVASALDPA LPTAEPARRA PPQEKPDAAA GQPQPPTPTK AEEVAALPPP  120
SERPSQERVA AAVEAEKQVK QQPATPVPAP PQQQQPPQEQ EGGAPEQASS VQEEEKNAAP  180
ARAQEGQEEL ARRRWRWLRA AVNLLFLRPK RKDKDSAAAK PPAPGGKPAV SGLEDKKTTP  240
ADKLHGEDSA GGVLDKPEVK QKDEGEGSKG RMFWCPMADV PTPIDGQVSP EQEGIMNIDL  300
DLGVAEMIRD KFVGVDSGQI EGNGQEGGEA GAEEVELALE AGNVITERRI GWTRKSAREG  360
PSERIAVNEE SAITRALSQA ARNRGSPIFQ PLEGTLFSSS EEARDFFNLY SWEIGFGIRY  420
GRSNKNNKGY TTRQDIVCSC EGSPRTKNCA SIRTGCKVMI RLLRTSDHGW YISRVSTSHN  480
HKLSEGYAEK KQWNSHSMID PSTKYFIKKL RDNNVSIGRV CSIIGVTDSS AMNPVRKETI  540
RSLCAKVARE NMADDIGKTV QLLREMKIKD PLMEVRFKVD EKGTVKSMLW CTGKNRMDYK  600
NFGDSIIFGG VLLSTETAED FQWAFQNFIE MMDGSVPITV LTDQCAAMGK AIRTVLPGTR  660
HRWCRWHVLK SAKKKLGKVI ARHNQFKIDF YNLITNETCV DSFELSWKKL IIKYRLVKSK  720
YMLRLYKHRE KWAKPYFMSV FCAGMTSTQR SESANHMLKR YIQKAAPMHL FVSKFNEFLC  780
DRTEQEAREQ HVTKMVTRRM RVGAPIEEHA DLVYTRAMYE KFYDELFEAG KFCVQREDGN  840
DRFIVSSAKL SSDGVQKKYV VTLHGEDFMS CQCGLYEHLG MLCRHALKVL LHLDRQEIPK  900
FNIMRRWTKE AVVYKAHGEQ TDIASDADQM RKKALMLQTL QIVHGPSPVD EQMFRNAMEA  960
LRPADRTQRE DPPFDGQYQC SLHDDAGPVP LSCPPRTMKG GRPPSTGLNA WISRKDKRTL  1020
DSSPRDPISE DWPEEEMPPS KKTRCLKDI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG299700.4.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432361e-153AC243236.1 Panicum virgatum clone PV_ABa020-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310926.10.0protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A1B6Q0S60.0A0A1B6Q0S6_SORBI; Uncharacterized protein
STRINGPavir.J10053.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-60FAR1-related sequence 5