PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG298700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 322aa    MW: 33976 Da    PI: 5.6325
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG298700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.7e-11120167455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h ++Er RR+r+++ f++L el+P+     s K++Ka+   +++++Ik L+
  Pavir.1NG298700.1.p 120 VHIIMERERRRRMKDMFNTLHELMPHV----SNKVDKATLIGETINFIKTLE 167
                          599***********************7....79****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.192116166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-14119179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-12120180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-9120167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-8122172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5167110.348248321IPR002912ACT domain
CDDcd021160.00117249298No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAQDGPHDHQ DTTSSDERSF VPPMTLTFLG PVKNENDDDN RGSRIGSPVG MDGREGKDVV  60
PNAAIQGGDG SAGGGKADSG TSEGKHLATG AAAADAAGDG STSNKGKTTL AAVDDGELKV  120
HIIMERERRR RMKDMFNTLH ELMPHVSNKV DKATLIGETI NFIKTLEETK AQLEKKKLEQ  180
ALARQATAEA AASGASSFSV PRTAHGMAAL SDGWDPVPRQ QPAAAGPVGF QTWSTPNVVL  240
SVLNDEAVIN VCVPRQRGVL TMVLSVLRKH GIDVISIQVG ADDAQSFFNI NTRVNGAGGE  300
NRSAEDIYKL AVSEILVWLS N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG298700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821619.11e-159transcription factor bHLH95-like
TrEMBLA0A2T7F7F51e-170A0A2T7F7F5_9POAL; Uncharacterized protein
STRINGPavir.Aa01765.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-20bHLH family protein