PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG298200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 295aa    MW: 30402.3 Da    PI: 11.8539
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG298200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83e-19129177355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++GVr+++ +g+W+AeIrdp     + +r++lg+f t+e+Aa+a +aa+++l+g
  Pavir.1NG298200.1.p 129 FRGVRRRP-WGKWAAEIRDPQ----KaARVWLGTFVTPEDAARAFDAAALRLRG 177
                          8*******.**********93....36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.25128185IPR001471AP2/ERF domain
SMARTSM003805.4E-35128191IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-31128186IPR001471AP2/ERF domain
CDDcd000181.49E-19129187No hitNo description
SuperFamilySSF541713.4E-21129186IPR016177DNA-binding domain
PfamPF008472.0E-12129177IPR001471AP2/ERF domain
PRINTSPR003672.8E-10129140IPR001471AP2/ERF domain
PRINTSPR003672.8E-10151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MRPPPPSTVP TPPSREATEA AAIVAALAQV VAGGRGATLT TPRPTGSPAP SPVVPPWPPA  60
ALGSHHGDVG PAACQGAGAA SAHIVSGSAV PQDRSAPAQC LVPSPAQAPM ASTWRQGAEQ  120
GMAPPPRSFR GVRRRPWGKW AAEIRDPQKA ARVWLGTFVT PEDAARAFDA AALRLRGSRA  180
KLNFPEDASS LRHRPAPVGS RRPISGWNRT IDRSPCPEML SRRDATGGFM GGGDNGRFLG  240
SWNIGTSSPL PMTTCSIAPV NVNATLVRGS HGTGSSGAEN AGMGMDKRNS ARYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21127190468ATERF1
3gcc_A1e-21127190468ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG298200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056117e-50AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21.
GenBankAP0149587e-50AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821609.11e-100ethylene-responsive transcription factor ERF095-like
TrEMBLA0A2S3GQ771e-130A0A2S3GQ77_9POAL; Uncharacterized protein
STRINGPavir.Aa01785.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150381120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.13e-21ERF family protein