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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.1NG297600.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
ERF |
Protein Properties |
Length: 242aa MW: 25537 Da PI: 11.0497 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.1NG297600.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 67.3 | 3e-21 | 125 | 173 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
y+GVr+++ +g+W+AeIr+p+ + +r++lg+f t+e+Aa+a++aa+++l+g
Pavir.1NG297600.1.p 125 YRGVRRRP-WGKWAAEIRVPK----KaARIWLGTFATPEDAARAYDAAALRLRG 173
9*******.**********94....45*************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 242 aa
Download sequence Send
to blast |
MRPPQSSPAP ASLAEAAEEA VIVAALTHVI AHGRGATLAP HAPSLAVPPY PLTATATGCH 60 RGHAGQAAWR VEPSVHIVSA RDRSACEQGL MASAAQELAP MASACPQEAQ RGAAAAAASA 120 LRRSYRGVRR RPWGKWAAEI RVPKKAARIW LGTFATPEDA ARAYDAAALR LRGSGAKLNF 180 PEDASSLRHP PAPVGSRQPG YGWDRTLERS PWPEMVTRRD NGRFLGPWSI GTSSLSPMPT 240 L*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP005611 | 2e-46 | AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21. |
GenBank | AP014958 | 2e-46 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |