PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1NG296100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 402aa MW: 45388.1 Da PI: 6.7118

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1NG296100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.6	5.1e-21	85	181	1	84
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sesss 77 +Wt ++v++L+ a+ +++e++ ++ ++k++W+ vs++m er f++sp+qC++k+++lnkryk+++e+ +++t ++ ++ Pavir.1NG296100.1.p 85 KWTSEMVKLLVSAVAYIDEDIDADHgtssgrkrhamlKRKGKWRLVSSVMTERSFSVSPQQCEDKFNDLNKRYKRLTEILGRGTaCQIVE 174 7************999999987556678888999899*****************************************95488888 PP trihelix 78 tcpyfdq 84 + ++++q Pavir.1NG296100.1.p 175 KPALLEQ 181 8777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.5E-19	83	208	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MEGNLPPRAL IPGGAPFDLG QPFHFADQPQ VVQVHQGAFA APAANQMQGF GGAVKPSLSS 60 EEDADDGHHG RGKAAAPASQ WHRVKWTSEM VKLLVSAVAY IDEDIDADHG TSSGRKRHAM 120 LKRKGKWRLV SSVMTERSFS VSPQQCEDKF NDLNKRYKRL TEILGRGTAC QIVEKPALLE 180 QVSLSAKLKE EAKKHLSSKH LHYEEMCSYH NHNRHCLLDD PALQRSLRMA LRSPGEQGKK 240 CSFGYDDEDD QMFLSDEDDE DDGFNDDLEF SAEDHRHHRV HGSKKMKHDH EGGHCGSHLS 300 EVAAIDMNRM FSEGTGGGSA AEKNPSGMNA VQIETQRLKI KEEMLKLEQS RLKWLRSCKE 360 KDRELEKMKL ENERMELENE RLELELKLKE IEMGIKPKRI Y*

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MEGNLPPRAL IPGGAPFDLG QPFHFADQPQ VVQVHQGAFA APAANQMQGF GGAVKPSLSS  60
EEDADDGHHG RGKAAAPASQ WHRVKWTSEM VKLLVSAVAY IDEDIDADHG TSSGRKRHAM  120
LKRKGKWRLV SSVMTERSFS VSPQQCEDKF NDLNKRYKRL TEILGRGTAC QIVEKPALLE  180
QVSLSAKLKE EAKKHLSSKH LHYEEMCSYH NHNRHCLLDD PALQRSLRMA LRSPGEQGKK  240
CSFGYDDEDD QMFLSDEDDE DDGFNDDLEF SAEDHRHHRV HGSKKMKHDH EGGHCGSHLS  300
EVAAIDMNRM FSEGTGGGSA AEKNPSGMNA VQIETQRLKI KEEMLKLEQS RLKWLRSCKE  360
KDRELEKMKL ENERMELENE RLELELKLKE IEMGIKPKRI Y*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.7390	0.0	callus\| leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1NG296100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806041.1	0.0	uncharacterized protein LOC112884725
TrEMBL	A0A2T8KWD6	0.0	A0A2T8KWD6_9POAL; Uncharacterized protein
STRING	Pavir.Aa01737.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12774	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	8e-65	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Pavir.1NG296100.1.p