PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG257900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 292aa    MW: 31190.7 Da    PI: 6.3683
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG257900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.19.7e-25114175159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDg +WrKYGqK++ g+ +pr+Y+rCt++   gCp++k+v+r++ dp + +++Y+g H + 
  Pavir.1NG257900.1.p 114 LDDGLSWRKYGQKDILGAMYPRAYFRCTHRhshGCPATKHVQRADGDPLLYDVVYHGAHVCA 175
                          58***************************99999*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-26101176IPR003657WRKY domain
SuperFamilySSF1182904.58E-24108175IPR003657WRKY domain
PROSITE profilePS5081121.264109172IPR003657WRKY domain
SMARTSM007748.7E-38114176IPR003657WRKY domain
PfamPF031064.0E-24115174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDGCGGGGEK RALASELAQV QAMVRELEAR MDQDLPAAAR ELCGELASSV DRSIRIARAC  60
GWDSPGSRDG SPRSDGAQHP AGGGGGNAQS KRRKGAPCVR TQVRVAAVQD MAPLDDGLSW  120
RKYGQKDILG AMYPRAYFRC THRHSHGCPA TKHVQRADGD PLLYDVVYHG AHVCAQAAHP  180
AAEHLRRQLQ PEGHADAGQE LRSPLAPETE GLRAGLEPTA PYSFGPAPGA GADFGGYLPL  240
LSPTGLEWQL RSSYAAGGLG VGMDYEPHFE EFYTNAADPF HWEYQDLYAA N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-19114174868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG257900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586190.0KU058619.1 UNVERIFIED: Panicum miliaceum WRKY1-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806380.10.0probable WRKY transcription factor 30
TrEMBLA0A2S3H9K00.0A0A2S3H9K0_9POAL; Uncharacterized protein
STRINGPavir.J01329.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-29WRKY family protein