PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG216400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 360aa MW: 39873.9 Da PI: 9.3413 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 154.9 | 3.4e-48 | 31 | 156 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +pGfrFhPt+eel+++yL+++v+gk +++ e i+ vd+y+++PwdLp+ ++ ++kew+f+++rd+ky++g+r+nr+t sgyWkatg d+ Pavir.1NG216400.1.p 31 MPGFRFHPTEEELIDFYLRRRVDGKCFNI-ELINLVDLYRYDPWDLPALASIGDKEWFFYVPRDRKYRNGDRPNRVTPSGYWKATGADRM 119 79***************************.89***************888889************************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v +++++ +glkktLvfy g+apkg +++W+m+eyrl Pavir.1NG216400.1.p 120 VRVEGNRSIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 156 ***********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-55 | 30 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.777 | 30 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.4E-24 | 32 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MGGDHNHHHD GSMARGAGSD DGPQQAHDMV MPGFRFHPTE EELIDFYLRR RVDGKCFNIE 60 LINLVDLYRY DPWDLPALAS IGDKEWFFYV PRDRKYRNGD RPNRVTPSGY WKATGADRMV 120 RVEGNRSIGL KKTLVFYVGK APKGLRSSWI MNEYRLPHGE ADRYQKEISL CRVYKRPGIE 180 DNFHLTTTAR SSGSKAAASM EKKHHRTSAS PRLAPMFDGA HSSAHMSKAY SGTNTIMASS 240 AAARAATMAP QTSMAFLSTA SLSSTTSTEE DGTSLYHLKG ANPPTMLPSS THALLNANST 300 TMATIPIDEL SRAIGSYNNQ GNPNQPFPSQ GPLLPFPSME KIWDWNPLLE SPKVCTSFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-53 | 32 | 176 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-53 | 32 | 176 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-53 | 32 | 176 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-53 | 32 | 176 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 7e-53 | 32 | 176 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 7e-53 | 32 | 176 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.15525 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG216400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822212.1 | 0.0 | NAC domain-containing protein 35-like | ||||
Swissprot | Q9ZVP8 | 1e-93 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | A0A3L6RGA7 | 0.0 | A0A3L6RGA7_PANMI; Protein ATAF2-like | ||||
STRING | Pavir.J38855.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7706 | 36 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 5e-95 | NAC domain containing protein 35 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG216400.1.p |
Publications ? help Back to Top | |||
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