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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.1NG188900.4.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 267aa MW: 30243.1 Da PI: 10.3833 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.1NG188900.4.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 39.6 | 1.2e-12 | 66 | 110 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+W++eE l++ v+++ +++W+t+ar + gR++ qc++rw yl
Pavir.1NG188900.4.p 66 KWSQEEYGNLIQMVNLHSSKSWSTVARGIT-GRSPRQCRDRWMFYL 110
8****************************9.***********9875 PP
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2 | Myb_DNA-binding | 45.2 | 2.1e-14 | 117 | 157 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
++W++ Ed +l++a k +G++ W + a+ ++ gRt+k +k++w
Pavir.1NG188900.4.p 117 QPWSEHEDIKLIQAQKIHGSK-WCKLAKLFP-GRTGKAVKNHW 157
79*******************.*********.*********** PP
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Sequence ? help Back to Top |
Protein Sequence Length: 267 aa
Download sequence Send
to blast |
MRRGGGGAPR RRSSGGSTCC SGEVDWIADE RGELQRPSKH LKDEEHKRTA DFLPHKKGNS 60 LKRSRKWSQE EYGNLIQMVN LHSSKSWSTV ARGITGRSPR QCRDRWMFYL DPAVNNQPWS 120 EHEDIKLIQA QKIHGSKWCK LAKLFPGRTG KAVKNHWPSL MRKQMKSDLV SGLPEQFLYM 180 PKDISVTKNK GSSTVQSDHD SSTNIHVSSD WAVRPNSEQG LAENGRNEST LKGKSYDSMH 240 EGLFCHREFS WVPAKRGINK FYGSCT*
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