PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG188900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 361aa MW: 40073.7 Da PI: 8.5634 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39 | 1.9e-12 | 66 | 110 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W++eE l++ v+++ +++W+t+ar + gR++ qc++rw yl Pavir.1NG188900.1.p 66 KWSQEEYGNLIQMVNLHSSKSWSTVARGIT-GRSPRQCRDRWMFYL 110 8****************************9.***********9875 PP | |||||||
2 | Myb_DNA-binding | 44.6 | 3.3e-14 | 117 | 157 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++W++ Ed +l++a k +G++ W + a+ ++ gRt+k +k++w Pavir.1NG188900.1.p 117 QPWSEHEDIKLIQAQKIHGSK-WCKLAKLFP-GRTGKAVKNHW 157 79*******************.*********.*********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 10.011 | 59 | 110 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 5.24E-26 | 63 | 157 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-8 | 63 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.15E-9 | 66 | 110 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-15 | 66 | 114 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 2.2E-13 | 67 | 127 | No hit | No description |
PROSITE profile | PS51294 | 19.212 | 111 | 165 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-12 | 115 | 163 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-19 | 115 | 166 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.02E-11 | 118 | 157 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MRRGGGGAPR RRSSGGSTCC SGEVDWIADE RGELQRPSKH LKDEEHKRTA DFLPHKKGNS 60 LKRSRKWSQE EYGNLIQMVN LHSSKSWSTV ARGITGRSPR QCRDRWMFYL DPAVNNQPWS 120 EHEDIKLIQA QKIHGSKWCK LAKLFPGRTG KAVKNHWPSL MRKQMKSDLV SGLPEQFLYM 180 PKDISVTKNK GSSTVQSDHD SSTNIHVSSD WAVRPNSEQG LAENGRNEST LKGKSYDSMH 240 GNGSVSHSVN VSEKVDWQIA ISNSLSCMDQ KASSATASFP GSLPKEESTN FMEVAPNRGL 300 STTYDHRSND CFDGICSSAN PESQELHLSS IADLLDMPYC KSLMIVSPDS PDHGNYTDGM 360 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-24 | 67 | 165 | 7 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-24 | 67 | 165 | 7 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG188900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828202.1 | 0.0 | transcription factor MYB3R-4-like isoform X1 | ||||
TrEMBL | A0A2S3GNF6 | 0.0 | A0A2S3GNF6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J04773.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16796 | 9 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 4e-31 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG188900.1.p |