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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.1NG143600.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
C3H |
Protein Properties |
Length: 337aa MW: 36719.6 Da PI: 7.6834 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.1NG143600.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 38.1 | 2.5e-12 | 188 | 213 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
y +C+++ +tG+C yGd+CkF+H+
Pavir.1NG143600.1.p 188 YQPDICKDYKETGYCGYGDSCKFMHD 213
67789********************7 PP
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Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SuperFamily | SSF90229 | 2.09E-9 | 186 | 218 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 187 | 215 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-7 | 187 | 214 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-12 | 188 | 218 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-10 | 188 | 213 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 2.7E-13 | 250 | 327 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Pfam | PF13920 | 2.7E-8 | 265 | 307 | No hit | No description |
SuperFamily | SSF57850 | 3.26E-13 | 265 | 308 | No hit | No description |
SMART | SM00184 | 1.6E-4 | 266 | 303 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 2.23E-7 | 266 | 307 | No hit | No description |
PROSITE profile | PS50089 | 10.527 | 266 | 304 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 281 | 290 | IPR017907 | Zinc finger, RING-type, conserved site |
Sequence ? help Back to Top |
Protein Sequence Length: 337 aa
Download sequence Send
to blast |
MADGGGGGGA GEPAAGAGSA PVCSFVRKPP KNIRKRPAAP AGSDDEDDGG GALAALRSKK 60 GPSSAGKLVF SSADASSEPR RFQYESSRTI QSTDSRATAT LETETEFDRD ARAIRERQLK 120 QAEKALKKNP SGASSASASG EVYKGIHGYT DYKAGFRREH TVASEKAGGS HGPLRASAHI 180 RLSARFDYQP DICKDYKETG YCGYGDSCKF MHDRGDYKSG WQLEKEWEEA EKARKRRIAM 240 GGGDGSDDEA ADEEDDDDDE ALPFACFICR QPFVDPVVTK CKHYFCEHCA LKHHSKNKKC 300 FVCNKPTMGI FNAAQEIRKK MAQDKKQQQQ QQQHED*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5z56_M | 1e-62 | 22 | 321 | 14 | 317 | RING finger protein 113A |
5z58_M | 1e-62 | 22 | 321 | 14 | 317 | RING finger protein 113A |
6ff4_t | 1e-62 | 22 | 321 | 14 | 317 | RING finger protein 113A |
6ff7_t | 1e-62 | 22 | 321 | 14 | 317 | RING finger protein 113A |
Search in ModeBase |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | BT041524 | 0.0 | BT041524.1 Zea mays full-length cDNA clone ZM_BFc0009J09 mRNA, complete cds. |
GenBank | BT055174 | 0.0 | BT055174.1 Zea mays full-length cDNA clone ZM_BFc0109L02 mRNA, complete cds. |
GenBank | JX469976 | 0.0 | JX469976.1 Zea mays subsp. mays clone UT3239 C3H-type transcription factor mRNA, partial cds. |