PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG093700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 145aa MW: 15269.2 Da PI: 5.1629 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 123.2 | 3e-38 | 1 | 144 | 234 | 374 |
GRAS 234 lsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl 319 ++P vv+++e+ea +s+ ++ ++++ a++yysa+fd+lea++p+ s +r vE+e+lg+ei vva +a r + + +W + Pavir.1NG093700.1.p 1 MNPSVVTLAEREAGIGSNcpaeDLHRGVAAAMDYYSAVFDALEATAPPGSADRLAVEQEVLGQEIDAVVAPGHAG--RRARGFDSWATAA 88 69**********77765545559***************************************************9..567799******* PP GRAS 320 eeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++aG++p pls +a++qa+lllr ++ s+gy ee +g+ +lgW++rpL+svS+W+ Pavir.1NG093700.1.p 89 RAAGLSPRPLSAFAVSQARLLLRLHYpSEGYVAEEARGACFLGWQTRPLMSVSSWQ 144 *******************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 18.499 | 1 | 123 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-35 | 1 | 144 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MNPSVVTLAE REAGIGSNCP AEDLHRGVAA AMDYYSAVFD ALEATAPPGS ADRLAVEQEV 60 LGQEIDAVVA PGHAGRRARG FDSWATAARA AGLSPRPLSA FAVSQARLLL RLHYPSEGYV 120 AEEARGACFL GWQTRPLMSV SSWQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 8e-16 | 1 | 143 | 241 | 378 | Protein SCARECROW |
5b3h_A | 7e-16 | 1 | 143 | 240 | 377 | Protein SCARECROW |
5b3h_D | 7e-16 | 1 | 143 | 240 | 377 | Protein SCARECROW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in a small number of epidermal or subepidermal cells at the leaf axils, in axillary meristems and the entire tiller buds. Undetected in the shoot apical meristem. {ECO:0000269|PubMed:12687001}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG093700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727692 | 6e-89 | KJ727692.1 Zea mays clone pUT5631 GRAS transcription factor (GRAS17) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806722.1 | 1e-89 | protein MONOCULM 1 | ||||
Swissprot | Q84MM9 | 1e-51 | MOC_ORYSJ; Protein MONOCULM 1 | ||||
TrEMBL | A0A3L6RVP0 | 2e-89 | A0A3L6RVP0_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J22770.1.p | 4e-96 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3653 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55580.1 | 5e-39 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG093700.1.p |