PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG073300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 769aa    MW: 89336.9 Da    PI: 8.7586
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG073300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.41.5e-2081184291
                 FAR1   2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkw 76 
                          f+++Y+  +GF v+++++ ++   krngei+k +++C ++gk+ +++ k            +  +r+t+++ rt+C   ++vk+  +g w
  Pavir.1NG073300.1.p  81 FFSFYGFLAGFGVVTTHTVRTtskKRNGEIVKVEMKCHRYGKEPKQQIKdleqgveeptteKGAKRKTNVQVRTDCPVVMVVKEI-KGIW 169
                          9***************998877889******************9999889*********98889999******************.**** PP

                 FAR1  77 evtkleleHnHelap 91 
                          +v++l+l+HnHel+p
  Pavir.1NG073300.1.p 170 KVIRLDLDHNHELSP 184
                          *************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.4E-1981184IPR004330FAR1 DNA binding domain
PfamPF105516.8E-32304390IPR018289MULE transposase domain
PROSITE profilePS509669.792578616IPR007527Zinc finger, SWIM-type
SMARTSM005751.5E-6591618IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MQIEPIGGAA EEEYSEVATP AELHTDDDVN IGSQELTEGQ IEDFIRCEQQ AASEGNNADT  60
DSKYTPQIGM EFRDRNDAHH FFSFYGFLAG FGVVTTHTVR TTSKKRNGEI VKVEMKCHRY  120
GKEPKQQIKD LEQGVEEPTT EKGAKRKTNV QVRTDCPVVM VVKEIKGIWK VIRLDLDHNH  180
ELSPGNRDQL FGGRKYMTDA EKSMIRTLND NNIPTRKMIA ILSYLRGGLL ALPYKNKDVS  240
NFRTKINREI TGNDMTKALE YFRNRKSEDP SFYYKFDVDD NMKVRNLFWR EGSSLKYYAE  300
YGDCVSFDTT YMTNKYNLPF APFCGVTGHG HTYMFGCAFM SDEKIETFVW IFETFLESMG  360
GKHPKSIITD QDKAMRAAIK QVMPDARHRI VSSTLNTTKE GLQEEFEDVI NYSLTIHEFE  420
HLWQKMIADK GLENNKYFTK MWENRERFIP VYFKDDFFPF LQSTSRSEGT NARVKENVGP  480
TYSVISFLKE FQRLVDATNI KEDIADNQSR EKRPKELMYG YNVEKQAIEL YNRNIFQKFQ  540
YQLQQTERLK YKEIEEGKCF EVWPKNNQIY KPYRMRKYIV LTDLTKGKEE FSCICGKFNK  600
DGILCSHILK IIVEEDISEI PEKYIINRWR KKDRKMNLPM PEIVPKTHEM LRYNILSRKA  660
AMLTSKGSKM EETMEYLKEE FDRLDTMLDL LLSTTNTGGE VGSSSVQGSG TVGQDLHDPD  720
RVKQKGRPAL PTRLKPLIEE IRRKMAKEEK KKQNKKKNAA GRGLRKKI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG073300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311831.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLK4AJM90.0K4AJM9_SETIT; Uncharacterized protein
STRINGPavir.Aa03355.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-77FAR1-related sequence 5