![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.1NG069400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 391aa MW: 41529.5 Da PI: 4.2949 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 27.1 | 1.1e-08 | 86 | 162 | 1 | 70 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekk 70 +Wt e+laL++ + +++ +r+ + ++ v++++ r+rg +r + +C+ +we l +y ++++e + Pavir.1NG069400.1.p 86 EWTPAETLALVAEVAAVDDGWSRSVSTFQKRTMVAEALaasegpaRRRGSKRAAAECRRRWEALVAEYGTVRRWEVR 162 5**********************9999999999999999999*******************************9976 PP |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 391 aa Download sequence Send to blast |
MDPTAADQPC VIQALRAHSN AVPPPPLVQA LPAHHSPPKT HPPPAAAASS PAGAKRRPMP 60 TPTPTPTPPG PAPPSPRRTR LGGAPEWTPA ETLALVAEVA AVDDGWSRSV STFQKRTMVA 120 EALAASEGPA RRRGSKRAAA ECRRRWEALV AEYGTVRRWE VRTGGRYLEM GAAARRKAGL 180 PVEFDVEVYG AMDALVRVEE ALLAGAAGGA GGGGGYEVEG LVGGGASVQV GEQDGGDDRE 240 VGEDDVQEDE TVEAVKEEEK EEEEEDDDDD NNEEQEEMQV DDGNPDASND LEGHEMGTNS 300 EPDKGQNNAW DLAIKLQENA QHIHTILNHE TDEDAGQNHA HAGLVSPDAM ATTRQKADEL 360 IKSLGGLVSY LNQFTELVKE NGFENFVGMT * |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.17267 | 0.0 | callus| stem |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.1NG069400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT034113 | 3e-62 | BT034113.1 Zea mays full-length cDNA clone ZM_BFc0028J08 mRNA, complete cds. | |||
GenBank | BT085710 | 3e-62 | BT085710.1 Zea mays full-length cDNA clone ZM_BFc0050E20 mRNA, complete cds. | |||
GenBank | EU969957 | 3e-62 | EU969957.1 Zea mays clone 337834 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012701598.1 | 1e-178 | trihelix transcription factor ASR3 | ||||
TrEMBL | A0A368PHJ7 | 1e-177 | A0A368PHJ7_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J38222.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6353 | 24 | 33 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.1NG069400.1.p |