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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.1NG069400.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
Trihelix |
Protein Properties |
Length: 391aa MW: 41529.5 Da PI: 4.2949 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.1NG069400.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 27.1 | 1.1e-08 | 86 | 162 | 1 | 70 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekk 70
+Wt e+laL++ + +++ +r+ + ++ v++++ r+rg +r + +C+ +we l +y ++++e +
Pavir.1NG069400.1.p 86 EWTPAETLALVAEVAAVDDGWSRSVSTFQKRTMVAEALaasegpaRRRGSKRAAAECRRRWEALVAEYGTVRRWEVR 162
5**********************9999999999999999999*******************************9976 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 391 aa
Download sequence Send
to blast |
MDPTAADQPC VIQALRAHSN AVPPPPLVQA LPAHHSPPKT HPPPAAAASS PAGAKRRPMP 60 TPTPTPTPPG PAPPSPRRTR LGGAPEWTPA ETLALVAEVA AVDDGWSRSV STFQKRTMVA 120 EALAASEGPA RRRGSKRAAA ECRRRWEALV AEYGTVRRWE VRTGGRYLEM GAAARRKAGL 180 PVEFDVEVYG AMDALVRVEE ALLAGAAGGA GGGGGYEVEG LVGGGASVQV GEQDGGDDRE 240 VGEDDVQEDE TVEAVKEEEK EEEEEDDDDD NNEEQEEMQV DDGNPDASND LEGHEMGTNS 300 EPDKGQNNAW DLAIKLQENA QHIHTILNHE TDEDAGQNHA HAGLVSPDAM ATTRQKADEL 360 IKSLGGLVSY LNQFTELVKE NGFENFVGMT *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT034113 | 3e-62 | BT034113.1 Zea mays full-length cDNA clone ZM_BFc0028J08 mRNA, complete cds. |
GenBank | BT085710 | 3e-62 | BT085710.1 Zea mays full-length cDNA clone ZM_BFc0050E20 mRNA, complete cds. |
GenBank | EU969957 | 3e-62 | EU969957.1 Zea mays clone 337834 hypothetical protein mRNA, complete cds. |