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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.1NG057900.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
E2F/DP |
| Protein Properties |
Length: 418aa MW: 45387.1 Da PI: 5.0845 |
| Description |
E2F/DP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.1NG057900.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | E2F_TDP | 83.3 | 2e-26 | 150 | 215 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
r+++sL+llt+kf++ll+++++gi++ln +a++L +v ++RRiYDi+NVLe+++liek+ kn+irwkg
Pavir.1NG057900.1.p 150 RYDSSLGLLTKKFINLLKQAPDGILDLNIAAETL---EV--QKRRIYDITNVLEGIGLIEKTLKNRIRWKG 215
6899******************************...99..****************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005667 | Cellular Component | transcription factor complex |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 418 aa
Download sequence Send
to blast |
MSGVGSGRPP AAQKILQSLR PPIAFASPSR PPFAAPDDYH RFPTPAAAAA PAATSGGVGA 60
AGASDTIEEG LVIRTPLKRK ATSEDNDAAE SSDCIITSTG FPGSSMLTPV SGKTVKTSKS 120
KAKNNKAGPQ TPTSNVGSPL NPETPAGTCR YDSSLGLLTK KFINLLKQAP DGILDLNIAA 180
ETLEVQKRRI YDITNVLEGI GLIEKTLKNR IRWKGLDDSG VDLDNGISAL QAEVENLSLQ 240
EQALDEHIRD MREKLRGLTE DENNQRWLYV TEDDIKRLPC FQNETLIAIK APHGTTLEVP 300
DPDEVGDYLQ RRYRIVLRST MGPIDVYLVS QFDEKFEDLG GVATPTRHTN MPRRYPIEDS 360
NTTNGGQCST AMDVEQNVQQ SQRTPQDPSA LHDFGGMTRI IPSDVDVSQI FLKFILF*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Most abundant in early S phase. Decreased expression during the passage into G2. {ECO:0000269|PubMed:11108847, ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543}. |
| Uniprot | TISSUE SPECIFICITY: Highly expressed in the shoot apical meristem, emerging leaf primordia, and vascular tissues of young leaf primordia. Expressed in flowers, in epidermis and cortex of hypocotyls, and at lower levels in leaves. {ECO:0000269|PubMed:11108847, ECO:0000269|PubMed:11889041}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:15377755, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:19662336}. |
