PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG039000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family BES1
Protein Properties Length: 585aa    MW: 65480.9 Da    PI: 5.3465
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG039000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822105.41.1e-32111529134
               DUF822  29 iyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspesslq.sslkssalaspvesysaspk 115
                          ++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r + +p+    + + g ++ as  ++   ++l+s+a+ +p++s+++ ++
  Pavir.1NG039000.1.p   1 MLAGLRQHGNFPLPARADMNDVLAALARAAGWTVHPDGTTFRSSNQPPplPPPPQLGMFQVASGDTPAFiNALNSYAIGTPLDSQASALQ 90 
                          79********************************************99999999***************99******************* PP

               DUF822 116 sssfpspssldsislasa......a 134
                          +++++spsslds+ ++ +       
  Pavir.1NG039000.1.p  91 TDDSLSPSSLDSVVAERSiktenfG 115
                          *************987665554442 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.8E-311125IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene3DG3DSA:3.20.20.801.6E-173144578IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514451.6E-170145578IPR017853Glycoside hydrolase superfamily
PfamPF013731.4E-83168539IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-54182196IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-54203221IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-54225246IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-54318340IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-54391410IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-54425441IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-54442453IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-54460483IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-54498520IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MLAGLRQHGN FPLPARADMN DVLAALARAA GWTVHPDGTT FRSSNQPPPL PPPPQLGMFQ  60
VASGDTPAFI NALNSYAIGT PLDSQASALQ TDDSLSPSSL DSVVAERSIK TENFGNSSSV  120
NSLNCMDNNQ LLRSSAMLAG DYTKTPYIPV YASLPMGIIN SHCQLVDPEG VRAELRHLKS  180
LNVDGVVVDC WWGIVEAWIP RKYEWSGYRD LFGIIKEFKL KVQVVLSFHG SGETGSGDVL  240
ISLPKWIMEI AKENQDIFFT DREGRRNTEC LSWGIDKERV LRGRTGIEVY FDFMRSFHTE  300
FRNLSEEGLI SAIEIGLGAS GELRYPSFPA RMGWKYPGIG EFQCYDRYMQ KNLRQSALSR  360
GHLFWARGPD NAGYYNSRPH ETGFFCDGGD YDSYYGRFFL NWYSGILIDH VDQVLSLAAL  420
AFDGAEIVVK IPSIYWWYRT ASHAAELTAG FYNPTNRDGY SPVLKMLKKH SIILKLVCYG  480
AEFTVQENDE AFADPEGLTW QVMNAAWDHG LPLCIESALP CLDGDMYSQI LDTAKPRNDP  540
DRHHASFFAY RQQPPFLLQR DACYPELRTF VKCMHGEAPQ NGED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12414757711444Beta-amylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG039000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811466.10.0beta-amylase 8 isoform X2
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A2S3GL090.0A0A2S3GL09_9POAL; Beta-amylase
STRINGPavir.Aa03184.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.20.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]