PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG026100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 270aa    MW: 29061.1 Da    PI: 4.6565
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG026100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.9e-05244267123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          + C+ C+k F + s L++H +  H
  Pavir.1NG026100.1.p 244 HACKTCSKAFGSESALESHKKAkH 267
                          67*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.22E-5233266No hitNo description
PROSITE profilePS5015711.136244269IPR007087Zinc finger, C2H2
PfamPF139127.8E-6244268IPR007087Zinc finger, C2H2
PROSITE patternPS000280246267IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEFWGKEVKP GTKVSCKANE GYVIHLSQAA LGEAKKESEN IVVSVKVDDN KLVLGTLSVE  60
KHPQIACDLI FESDFELLHN EELETDEIPI KKDEITKSAA NVLVKNGKNV EQDVDEEMSS  120
GDDDFTDDSD DTEMSEDGSS DEEMSSATDL SGDSEDESEE SEEEQTPTPK KPEVVGKKRA  180
IEAVTPSGKK AKVEPTGLKT GDKKVHVSTL HPTKQASKTP ADKSGKTPAT DKKSKEKSPK  240
SGGHACKTCS KAFGSESALE SHKKAKHEA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG026100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817613.11e-125histone deacetylase HDT2-like
TrEMBLA0A2S3HPE01e-123A0A2S3HPE0_9POAL; Uncharacterized protein
TrEMBLA0A2T7DCT11e-123A0A2T7DCT1_9POAL; Uncharacterized protein
STRINGPavir.J03355.1.p1e-151(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.29e-23histone deacetylase 3