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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.1NG019900.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
Whirly |
Protein Properties |
Length: 230aa MW: 25328.1 Da PI: 10.045 |
Description |
Whirly family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.1NG019900.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Whirly | 187.5 | 2.2e-58 | 54 | 191 | 2 | 139 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvr 91
v+k+kaal++++++p+f++++sg+ +++r+G+++l++ +a+++rkyd+ kkq fals+tev++l+ l++ esceffhdp++k+s+eG+v+
Pavir.1NG019900.1.p 54 VFKGKAALSIHPILPSFSKMESGAYRMNRNGSVMLTFLPAVGQRKYDYTKKQLFALSPTEVGSLICLGPAESCEFFHDPSMKSSHEGQVK 143
9***************************************************************************************** PP
Whirly 92 kalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
k+l++ Pl GsG+fvn++v n+++k+ +++svP++kaefav+r++l+
Pavir.1NG019900.1.p 144 KSLSLTPLGSGSGYFVNITVLNNVQKTTDRLSVPITKAEFAVMRTALS 191
*********************************************985 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 230 aa
Download sequence Send
to blast |
MLRIYRFLPS ASRRGFDLKE PLWSGSLTFQ QAVSTSAGNL DENLSGKKFA SYTVFKGKAA 60 LSIHPILPSF SKMESGAYRM NRNGSVMLTF LPAVGQRKYD YTKKQLFALS PTEVGSLICL 120 GPAESCEFFH DPSMKSSHEG QVKKSLSLTP LGSGSGYFVN ITVLNNVQKT TDRLSVPITK 180 AEFAVMRTAL SFALPHIMGW DQVLTHHPAP LASNKPRMEG PHPDSEWER*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4kop_A | 1e-75 | 45 | 206 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_B | 1e-75 | 45 | 206 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_C | 1e-75 | 45 | 206 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_D | 1e-75 | 45 | 206 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU963457 | 0.0 | EU963457.1 Zea mays clone 262942 DNA binding protein mRNA, complete cds. |