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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.1NG017300.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
C3H |
Protein Properties |
Length: 438aa MW: 50166.5 Da PI: 9.0209 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.1NG017300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 22.1 | 2.6e-07 | 33 | 56 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt+lC ++r G C++ d+C+FaHg
Pavir.1NG017300.1.p 33 YKTKLCALWQR-GGCSR-DTCSFAHG 56
9**********.*****.*******8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 438 aa
Download sequence Send
to blast |
MRDRSVDREF PSRERGDRPP PGMLGPPRRG PAYKTKLCAL WQRGGCSRDT CSFAHGHAEL 60 RRFPGSRTSF PPRAGRRDYR GGDFRERFDR RRSPHRRHSP DRDSRDHRPL HEQRPTSQER 120 ESSYSRSPSR KSDRRHEKNP DDGETNSSRS LSVSDKNDDR KKETLSVDDK EDQEIQLKQI 180 RQDMELLRED KSNLEIILDE KNAEVRKISS RVNDLDLQIR KEKEECHRMT SKIKKFIKAH 240 ARFLKAQEEL KRSQARFERL GDLLASDILK RGANEEVSSV NVDEDPNGPY ERSPNAATTK 300 KRSIPYSTSE EAKAVKKRRD RDSEFDKSSK GTEPTKALYL KKKLWEDEKD KIGTSANTDK 360 VKDSPVKHVL PSTGMAAHAV DDLFEAVELE DRHGPINASV ENGAGDETRS PAMPSQPPPV 420 VNAYEQYEGD DEEVDVE*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 299 | 318 | KKRSIPYSTSEEAKAVKKRR |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT040240 | 0.0 | BT040240.1 Zea mays full-length cDNA clone ZM_BFc0072P19 mRNA, complete cds. |
GenBank | EU962039 | 0.0 | EU962039.1 Zea mays clone 239776 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds. |