PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG555300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 647aa    MW: 71297.6 Da    PI: 4.749
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG555300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.6e-07107129427
                          ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          ++C +f++ G C  GdrC F+Hgp
  Pavir.1KG555300.1.p 107 VPCYYFQK-GMCAKGDRCAFSHGP 129
                          69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.7E-41442IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.6951443IPR000571Zinc finger, CCCH-type
PfamPF156637.9E-121569No hitNo description
PROSITE profilePS5010311.0284571IPR000571Zinc finger, CCCH-type
SMARTSM003562.54770IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037103130IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-6104129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.04E-5106128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4108129IPR000571Zinc finger, CCCH-type
PfamPF146080.26108128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MDSAARPDEE EARRRRSTDC IYFLASPLTC KKGSECEFRH SDAARMNPRD CWYWFNGNCA  60
NPKCSFRHPP LDNLLGAPTT PRAPQQPAPQ VSVPAQAHGS VLAKQGVPCY YFQKGMCAKG  120
DRCAFSHGPQ PAGTPQPPPA AKIFTPALQP NSQLKNSWTK PNSSGQQNMP AGIQDKSKLS  180
IHDAKPVQKQ HVTSRVDHSS RTYQNHSNSY AQSGTTKQPQ PSVQDGLSEN GMEAGEFLRE  240
PSAGSGVLVA GVNDDSEQSF KGNRNSYHHH TERSYRSSAE RLSSDKRISE REPMPAVIAG  300
SSDLRHRLLK QRRLNNNLRS TEAPDMNDAC LEGERNDQHR WRGEEHDRPL PRPRLRDRIR  360
LPGATSFDRH GSCSEEWDRG PRGRLSPPKH SDLRGKLHER LKVRSAEEIP VNSVKSSVAK  420
ASNGEDAESL NFAGPKSLAE LKAKKGGGSS SREEAIVKGV GLSRVTSGII SSREPAPFEG  480
PKPLSAILKR KREVASEDAV AHFGSIQEED NAAGVDEESQ ILADDMVEEN MEGNTAAEEG  540
EEEAFHPEDD VAYDDNADEA TGQELEEHQD VEIAGEDYDY EAADTNADAG QELEEHQDVE  600
AAAEDYDYEA ADVNAEEDNE YQEYQDDDDD LEDDDDFARK VGVMIS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.268760.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG555300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805705.10.0zinc finger CCCH domain-containing protein 19-like
SwissprotQ6K9770.0C3H19_ORYSJ; Zinc finger CCCH domain-containing protein 19
TrEMBLA0A2T7FEB90.0A0A2T7FEB9_9POAL; Uncharacterized protein
STRINGPavir.Ab03367.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130972123
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]