PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG518100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 678aa    MW: 73655.7 Da    PI: 6.3714
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG518100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.12e-28211264155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  Pavir.1KG518100.1.p 211 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 264
                          79*******************.********************************8 PP
2Response_reg78.22.8e-26231311109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl vdD+p+ +++l+++l++ +y +v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge +++ +
  Pavir.1KG518100.1.p  23 VLAVDDDPVCLKVLETLLRRCQY-RVTTTNQAAIALRMLRENRdlFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVMK 110
                          799********************.***************99999********************87754.558***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           +  Ga d+l Kp+  eel++
  Pavir.1KG518100.1.p 111 GITHGACDYLLKPVRLEELRN 131
                          *******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.9E-1831677IPR017053Response regulator B-type, plant
SuperFamilySSF521724.7E-3520147IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.9E-4220144No hitNo description
SMARTSM004482.9E-3121133IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.63122137IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-2323132IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.53E-2724136No hitNo description
PROSITE profilePS5129412.637208267IPR017930Myb domain
SuperFamilySSF466891.06E-19209268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-30209269IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-25211264IPR006447Myb domain, plants
PfamPF002491.2E-6213263IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MRPEERNGAV RRVRDQFPVG MRVLAVDDDP VCLKVLETLL RRCQYRVTTT NQAAIALRML  60
RENRDLFDLV ISDVHMPDMD GFKLLELVGL EMDLPVIMLS VNGETKTVMK GITHGACDYL  120
LKPVRLEELR NIWQHVVRRK FSNRERANVD GYEECNRPSN ADFDNVHGQI CGSPDQSGRP  180
SKKRKEYHSE EEDEGEESNS QDNDDSSGPK KPRVVWSVEL HRKFVAAVNQ LGIDKAVPKR  240
ILELMNVEKL TRENVASHLQ KYRLYLKRLS AVASHQASIV AALGGSDPFM RMGAFEGLQS  300
YQGFTSSAGL SSFSPQGLLT RNNPTSFGIQ GIAASRPIQI ATVNSTISHS IGDANKYQLS  360
LPGTSNRTGN LSQGLKATSV GQVQLPQKWI QEETHDFSTV ISGNGLVNGV PGTLRSVADS  420
PSLQQDLVEH RQAKIAMQPS SSANSEHLEG TTGVSFSLMD SHISQQSDLL LSAFSASAVP  480
MNGSFSGTDV AKLGGTSSGS TNICPSHDLR VARDNDVGDS SFGSVILLPP DTAQNQKYLN  540
FDGGSSVRHN MDGGSTDSLL DAKLAWSSLP TTQPPSTIGS HHPLSQRLNN GSLGVKMIEQ  600
TRASIAAPQT KVDMFISGDI LTPKNASDLS FPRLNSELSS SSCSFDGLLN SIIKMEKDDA  660
SFSDDLGCDF YSLGACI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-24207270164ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.95610.0callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG518100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810721.10.0two-component response regulator ORR23-like isoform X2
SwissprotQ6K8X60.0ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A2T7FD980.0A0A2T7FD98_9POAL; Two-component response regulator
STRINGPavir.J35630.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-113response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]