PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG510500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | AP2 | ||||||||
Protein Properties | Length: 366aa MW: 40319.6 Da PI: 4.958 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.6 | 4.8e-16 | 179 | 238 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++g+++A+++d + g ++ k+++lg+++t+e+Aa+a++ a++k++g Pavir.1KG510500.1.p 179 SCFHGVTRHRWSGKYEAHLWDsSCRvEGrrRKgKQVYLGSYDTEEKAARAYDVAALKYWG 238 789******************877786666336*************************98 PP | |||||||
2 | AP2 | 49.3 | 1.2e-15 | 281 | 332 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++ k+grW A+I + + ++lg+f t+eeAa+a++ a+ +++g Pavir.1KG510500.1.p 281 SIYRGVTRRQKDGRWQARIGLV-----AgtRDIYLGTFKTEEEAAEAYDIAAIEIRG 332 57****************9995.....234************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.6E-13 | 179 | 238 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-18 | 179 | 248 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.335 | 180 | 246 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-28 | 180 | 252 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-5 | 181 | 192 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-17 | 181 | 247 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.71E-20 | 181 | 248 | No hit | No description |
CDD | cd00018 | 2.74E-22 | 281 | 340 | No hit | No description |
Pfam | PF00847 | 1.7E-9 | 281 | 332 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-17 | 281 | 342 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-19 | 282 | 341 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-27 | 282 | 346 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.571 | 282 | 340 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-5 | 322 | 342 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MEESEEGVNL GKQMKEEKAA GESGDEGTME RSHSINLNTV PPVAVEARSI QENGETHGAG 60 VSGTKDSRTG EPEQPGDADQ KKLPKCEQVE YESEVEGRED PADKAALVTV ARNEGLAGYG 120 DDDERAQVLS IVKKDEPADE IGDSINPVPL TEAGCTEEKG AIVASAGISA VRPAGSRSSC 180 FHGVTRHRWS GKYEAHLWDS SCRVEGRRRK GKQVYLGSYD TEEKAARAYD VAALKYWGQN 240 TRLNFPISLY EKELEDIRDL SREECVTYLR RRSSCFSRGA SIYRGVTRRQ KDGRWQARIG 300 LVAGTRDIYL GTFKTEEEAA EAYDIAAIEI RGKNAVTNFD RSNYVDRGMH CIEGEGLRLL 360 MSKPE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 205 | 212 | GRRRKGKQ |
2 | 269 | 290 | RRRSSCFSRGASIYRGVTRRQK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.12411 | 0.0 | callus| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG510500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957460 | 0.0 | EU957460.1 Zea mays clone 1593084 protein BABY BOOM 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817227.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL1 isoform X1 | ||||
Swissprot | Q6PQQ3 | 7e-85 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A2S3GT80 | 0.0 | A0A2S3GT80_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7FCA6 | 0.0 | A0A2T7FCA6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab02943.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11888 | 29 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 2e-75 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG510500.1.p |
Publications ? help Back to Top | |||
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