PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG470100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Dof | ||||||||
Protein Properties | Length: 291aa MW: 30470.7 Da PI: 8.2765 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.7 | 7e-40 | 56 | 116 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ lkcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk++s Pavir.1KG470100.1.p 56 HDQPLKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGSLRNVPVGGGCRKNKRAS 116 7899******************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-30 | 54 | 110 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.8E-33 | 57 | 114 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.227 | 60 | 114 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 62 | 98 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MMAGAPPMHI CMDSDWLKGI VPEEPGMGSS SPSAELIACP RSVHAAAADR RLRPQHDQPL 60 KCPRCESTHT KFCYYNNYSL SQPRYFCKTC RRYWTKGGSL RNVPVGGGCR KNKRASAKKP 120 AAPPMLQAHG RQVVAETGLH LSFSGMQQLP PPPPAAADPL CSLGLLDWKY DPILAGSSGG 180 ALDGASSEAH FAGAGMMGIP GGGECHALSA LRYAAGLGDH LQLQGLPFGG RAEHDAVEAK 240 PAAAERLLSL DWYGEASRAP ESAISSLGAL GLWSGMIGGA HQHHGSSAAI * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.7271 | 4e-55 | callus |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00580 | DAP | Transfer from AT5G62940 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG470100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035326 | 0.0 | BT035326.1 Zea mays full-length cDNA clone ZM_BFb0055G17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826481.1 | 0.0 | dof zinc finger protein DOF5.6-like | ||||
TrEMBL | A0A2S3GSH1 | 0.0 | A0A2S3GSH1_9POAL; Uncharacterized protein | ||||
STRING | Si017962m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4704 | 32 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62940.1 | 1e-39 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG470100.1.p |