 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.1KG461000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
G2-like |
| Protein Properties |
Length: 359aa MW: 38192.9 Da PI: 8.3696 |
| Description |
G2-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.1KG461000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 102 | 3.8e-32 | 176 | 229 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
Pavir.1KG461000.1.p 176 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 229
9****************************************************7 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 359 aa
Download sequence Send
to blast |
MELFPAHPDL QLQISPPPAT KPMELGFWKR ALDAASPAAT TAAAAAATAT TAPSLSFTSS 60
SSAPTAAVGF HAAGGAHHHH QVPGSHLGLP FLHHTQPILP EGGGGIRDLA SMRPIRGIPV 120
YSTTQPLPFL QSHPHHHHHH PHCYDAIGVG HAGGPRSPKA ALRLAGASAK RGARAPRMRW 180
TTSLHARFVH AVELLGGHER ATPKSVLELM DVKDLTLAHV KSHLQMYRTI KTTDHKPASA 240
SSYGQATAKM IIDIPDDNLF EVTNTTSGSE SSAQQSNPDG NEHGSSMCAL WSNSSISSRG 300
AWFHDKSIDA TPGDIKSFED VQSERLDDVS DLNSSPFQVA GMFGRSKKPN LDFTLGRI*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j4k_A | 3e-16 | 177 | 231 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 3e-16 | 177 | 231 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_A | 3e-16 | 177 | 231 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 3e-16 | 177 | 231 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 3e-16 | 177 | 231 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 3e-16 | 177 | 231 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 3e-16 | 177 | 231 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 3e-16 | 177 | 231 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 3e-16 | 177 | 231 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 3e-16 | 177 | 231 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 3e-16 | 177 | 231 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 3e-16 | 177 | 231 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT036911 | 1e-107 | BT036911.1 Zea mays full-length cDNA clone ZM_BFb0147F05 mRNA, complete cds. |
| GenBank | KJ726829 | 1e-107 | KJ726829.1 Zea mays clone pUT3369 G2-like transcription factor (GLK47) mRNA, partial cds. |
