PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG451700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 467aa    MW: 49350 Da    PI: 9.2008
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG451700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.9e-154993147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r +WT++E+ ++++a +++G   W++I +++g ++t+ q++s+ qk+
  Pavir.1KG451700.1.p 49 REKWTEDEHGRFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 93
                         789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.25E-154397IPR009057Homeodomain-like
PROSITE profilePS5129418.4374498IPR017930Myb domain
TIGRFAMsTIGR015571.3E-154796IPR006447Myb domain, plants
SMARTSM007179.3E-114896IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-84989IPR009057Homeodomain-like
PfamPF002494.3E-134992IPR001005SANT/Myb domain
CDDcd001672.48E-85194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MACLEEHQMA TDEVAVDHRK DPLGTGDMDL SGEEQVPKAR KPYTITKQRE KWTEDEHGRF  60
LEALQLHGRA WRRIQEHIGT KTAVQIRSHA QKFFTKVVRE SSGSNTAAGA APAIQIPPPR  120
PKRKPARPYP RKVDGAAKKH VPALRHLEKP PPRTHSLRDQ DDGSPTSVLT SARTVLRAEE  180
LGSVFANSSS GSRSPVQSAA GSEEHGNGGD SPASSVDRED GGVSPSVATA ELATRTANPK  240
VLGDAKSGVG TDAPVFKLFG KKVVLKDSYE HHPQSGRDLR IGASPAIVAA GGSSWNPWPG  300
TVQQLMCFVP QPDGFAAQSV VPWLAYNGSL PCALFYPQAA PPAQHQQQHH QSSAPRDQKR  360
TQREGSLTGS NTASSAVPLP AASAAQNSDA AESHGPGQEN AGESGAAPAA AGAVPVPRLA  420
RCASSASFSR RGFVPYKRCA AESEARAPRP VAAGEEADGE LTRLCL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.176990.0callus| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG451700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814514.10.0protein REVEILLE 1-like
TrEMBLA0A2S3GS630.0A0A2S3GS63_9POAL; Uncharacterized protein
STRINGPavir.Ab02717.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.42e-34MYB_related family protein