PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG441000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 358aa    MW: 37851.8 Da    PI: 5.9544
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG441000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.4e-1497148155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Pavir.1KG441000.1.p  97 QRMMHIAVERNRRRQMNEYLAVLRSLMPEP---YVQRGDQASIVGGAIEFVKELE 148
                          79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-1795166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.66E-1495152No hitNo description
PROSITE profilePS5088815.15496147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-1197148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1398161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-11102153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MSALVDALCA PPGDAAALIY DTFNAASFLF DGPAAAAALY DGAGIVECPP PPPAQQQQAA  60
EAAGETTQAA TSSAPARVRK RRRWARSCKS REETETQRMM HIAVERNRRR QMNEYLAVLR  120
SLMPEPYVQR GDQASIVGGA IEFVKELEQQ LQCLEAQKRT LLVHQHKAAK PDATPMHHST  180
TTTSSTKAAA GTTACVEPAA AATTTSNCSS SVTEDAADHA PPPPFAQFFS YPQYVWCHSP  240
RDPASSSAAE DGGGRPGVAD IEVTLVETHA SLRVMMPRRP GQLLGLVAGL QALRLGVLHL  300
SVTALESLVL YSISVKVEEG CGLATVEDIA AAAHHVLCLI DAAEPAEQQV LAASDPR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17882RKRRR
297108RMMHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.158900.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG441000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0386551e-117BT038655.1 Zea mays full-length cDNA clone ZM_BFb0304G04 mRNA, complete cds.
GenBankBT0668891e-117BT066889.1 Zea mays full-length cDNA clone ZM_BFb0091G16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800848.10.0transcription factor bHLH94-like
TrEMBLA0A2T7FAP70.0A0A2T7FAP7_9POAL; Uncharacterized protein
STRINGPavir.Ab02502.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.12e-24beta HLH protein 71