 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.1KG434500.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
GRAS |
| Protein Properties |
Length: 341aa MW: 36980 Da PI: 8.2763 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.1KG434500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 241.9 | 2.7e-74 | 41 | 339 | 67 | 374 |
GRAS 67 setseknsseelaalklfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgsp 150
+ ts+ +++ +laa+k fs++sP+l+f+++ta qa+l++++g+ +++H+iDfd++ G+QW+++lq+La R+ + p +++T+++s+
Pavir.1KG434500.1.p 41 RLTSPLEVALKLAAYKSFSDLSPVLQFTNFTATQALLDEIAGStaSCIHVIDFDLGVGGQWASFLQELAHRRgaggAALPFVKLTAFVSA 130
556666788899*****************************998899************************977555589********** PP
GRAS 151 esgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvv 239
+s++ el+ t++++a+fA+ lg+ fefn++ + +++++ eL + +E++aV l + + +++L+lvk+lsPk+v
Pavir.1KG434500.1.p 131 ASHHPLELRLTRDNIAQFAADLGIAFEFNAV---SADMINPAELISTTgDEVVAVVLPVGCSARA---PP----LPAILRLVKQLSPKIV 210
******************************8...7889999999666669*******99776665...44....556************* PP
GRAS 240 vvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329
v +++ d+ + +F ++fl++++ ++ l+dsl+a + +++ + ++E++l++++i+++v +g+ + + Wr+++++aGF +vp
Pavir.1KG434500.1.p 211 VAIDHGGDRADLPFSQHFLNCFQSCVFLLDSLDAA-GIDADSACMIEKFLIQPRIEDAVLGRGKV-----DKPMAWRSAFTAAGFAAVPP 294
********************************888.7899*********************9997.....8899**************** PP
GRAS 330 sekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
s+ a++qa++ll++v+++g++ve+ l+l+W++ +Lv+vSaWr
Pavir.1KG434500.1.p 295 SNLAEAQADCLLKRVQVRGFHVEKCGVGLTLYWQRGELVTVSAWR 339
********************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 341 aa
Download sequence Send
to blast |
MLRWLKKVKP VTRLWWSVFV KLPRRSPVFC PTHRGYHGTC RLTSPLEVAL KLAAYKSFSD 60
LSPVLQFTNF TATQALLDEI AGSTASCIHV IDFDLGVGGQ WASFLQELAH RRGAGGAALP 120
FVKLTAFVSA ASHHPLELRL TRDNIAQFAA DLGIAFEFNA VSADMINPAE LISTTGDEVV 180
AVVLPVGCSA RAPPLPAILR LVKQLSPKIV VAIDHGGDRA DLPFSQHFLN CFQSCVFLLD 240
SLDAAGIDAD SACMIEKFLI QPRIEDAVLG RGKVDKPMAW RSAFTAAGFA AVPPSNLAEA 300
QADCLLKRVQ VRGFHVEKCG VGLTLYWQRG ELVTVSAWRC *
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT053927 | 0.0 | BT053927.1 Zea mays full-length cDNA clone ZM_BFc0046K18 mRNA, complete cds. |
| GenBank | BT063504 | 0.0 | BT063504.1 Zea mays full-length cDNA clone ZM_BFc0070G06 mRNA, complete cds. |
| GenBank | KJ727939 | 0.0 | KJ727939.1 Zea mays clone pUT6034 GRAS transcription factor (GRAS80) mRNA, partial cds. |
