PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG434500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 341aa    MW: 36980 Da    PI: 8.2763
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG434500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS241.92.7e-744133967374
                 GRAS  67 setseknsseelaalklfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgsp 150
                          + ts+ +++ +laa+k fs++sP+l+f+++ta qa+l++++g+  +++H+iDfd++ G+QW+++lq+La R+    +  p +++T+++s+
  Pavir.1KG434500.1.p  41 RLTSPLEVALKLAAYKSFSDLSPVLQFTNFTATQALLDEIAGStaSCIHVIDFDLGVGGQWASFLQELAHRRgaggAALPFVKLTAFVSA 130
                          556666788899*****************************998899************************977555589********** PP

                 GRAS 151 esgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvv 239
                          +s++  el+ t++++a+fA+ lg+ fefn++   + +++++ eL   + +E++aV l +          +     +++L+lvk+lsPk+v
  Pavir.1KG434500.1.p 131 ASHHPLELRLTRDNIAQFAADLGIAFEFNAV---SADMINPAELISTTgDEVVAVVLPVGCSARA---PP----LPAILRLVKQLSPKIV 210
                          ******************************8...7889999999666669*******99776665...44....556************* PP

                 GRAS 240 vvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329
                          v +++  d+ + +F ++fl++++ ++ l+dsl+a  + +++ + ++E++l++++i+++v  +g+       + + Wr+++++aGF +vp 
  Pavir.1KG434500.1.p 211 VAIDHGGDRADLPFSQHFLNCFQSCVFLLDSLDAA-GIDADSACMIEKFLIQPRIEDAVLGRGKV-----DKPMAWRSAFTAAGFAAVPP 294
                          ********************************888.7899*********************9997.....8899**************** PP

                 GRAS 330 sekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          s+ a++qa++ll++v+++g++ve+    l+l+W++ +Lv+vSaWr
  Pavir.1KG434500.1.p 295 SNLAEAQADCLLKRVQVRGFHVEKCGVGLTLYWQRGELVTVSAWR 339
                          ********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.4041319IPR005202Transcription factor GRAS
PfamPF035149.4E-7241339IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MLRWLKKVKP VTRLWWSVFV KLPRRSPVFC PTHRGYHGTC RLTSPLEVAL KLAAYKSFSD  60
LSPVLQFTNF TATQALLDEI AGSTASCIHV IDFDLGVGGQ WASFLQELAH RRGAGGAALP  120
FVKLTAFVSA ASHHPLELRL TRDNIAQFAA DLGIAFEFNA VSADMINPAE LISTTGDEVV  180
AVVLPVGCSA RAPPLPAILR LVKQLSPKIV VAIDHGGDRA DLPFSQHFLN CFQSCVFLLD  240
SLDAAGIDAD SACMIEKFLI QPRIEDAVLG RGKVDKPMAW RSAFTAAGFA AVPPSNLAEA  300
QADCLLKRVQ VRGFHVEKCG VGLTLYWQRG ELVTVSAWRC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-225533980375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG434500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0539270.0BT053927.1 Zea mays full-length cDNA clone ZM_BFc0046K18 mRNA, complete cds.
GenBankBT0635040.0BT063504.1 Zea mays full-length cDNA clone ZM_BFc0070G06 mRNA, complete cds.
GenBankKJ7279390.0KJ727939.1 Zea mays clone pUT6034 GRAS transcription factor (GRAS80) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817823.10.0scarecrow-like protein 27
TrEMBLA0A2S3GRU00.0A0A2S3GRU0_9POAL; Uncharacterized protein
STRINGPavir.Aa00854.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.14e-83GRAS family protein