PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG431100.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 674aa MW: 69818.1 Da PI: 5.4241

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG431100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	104.3	1.8e-32	351	482	3	137
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 + L ++A+a ++g+ a+++Larl+++ p g+p+ R a+y++eAL la+ +++ ts+ +++ +laa+k fs++sP+l+ Pavir.1KG431100.2.p 351 DELAAAAKAAEAGNSIGAREILARLNHQLPPLGKPFLRSASYLKEALLLALAE-----GYHGACRLTSPLDVALKLAAYKSFSDLSPVLQ 435 7899**********************************************9.....33457778888889************** PP GRAS 93 fshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpe 137 f+++ta qa+l++++g+ +++H+iDfd++ G+QW+++lq+La R++ Pavir.1KG431100.2.p 436 FTNFTATQALLDETAGStaSCIHVIDFDLGVGGQWASFLQELAHRRG 482 ***********998899*********************986 PP
2	GRAS	128.9	5.6e-40	484	672	171	374
GRAS 171 elgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259 lg+pfefn++ + +++++ eL + +E++aV l + + +++L+lvk+l Pk+vv +++ d+ + +F ++fl+ Pavir.1KG431100.2.p 484 DLGIPFEFNAV---SADTINPAELISTTgDEVVAVVLPVGCSARA---PP----LPAILRLVKQLGPKIVVAIDHGGDRADLPFSQHFLN 563 79******8...7788999888666569***99776665...44....556***************************** PP GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349 +++ ++ l+dsl+a + +++ + k+E++l++++i+++v +g+ + + Wr+++++aGF pvp s+ a++qa++ll++v+++g+ Pavir.1KG431100.2.p 564 CFQSCVFLLDSLDAA-GIDADSACKIEKFLIQPRIEDAVLGRGKV-----DKPMAWRSAFTAAGFAPVPPSNLAEAQADCLLKRVQVRGF 647 ********888.7899*****************9997.....8899******************************** PP GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374 +ve+ l+l+W++ +Lv+vSaWr Pavir.1KG431100.2.p 648 HVEKCGVGLTLYWQRGELVTVSAWR 672 **********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	22.848	323	652	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.1E-30	351	482	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-37	484	672	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence Send to blast
MRAALFGAER NGAADLGGGG KALYWPEGKA KALVEPRSVL DCTRSPSPNN STSTLSSSLG 60 GGGGADSTGV AAVSDSSAAA AAEATKWGAP GERGGGGKED WAGGCELPPI PAGLDMGLVG 120 GDSWDAVLGN AAAAGQDQTF LNWIIGAAGD LDQPGPPLPV HQQPLLDNAA FGFPAADPLG 180 FSLDPHLGGV ASDMSSPGAV SHTTNSGGGS KVSSAFGLFS TESASLQPPP PPVLFHEGID 240 TKPPLLGAQP PGPLLHQFQH QPPPATTFFM PLPSFPDHNQ QSPLLQPPPK RHQSMGDDLY 300 LARNRAAAAA QGLPFPPLHG PAPFQLQPSP PPPQGAMKTT AAEAAQQQLL DELAAAAKAA 360 EAGNSIGARE ILARLNHQLP PLGKPFLRSA SYLKEALLLA LAEGYHGACR LTSPLDVALK 420 LAAYKSFSDL SPVLQFTNFT ATQALLDETA GSTASCIHVI DFDLGVGGQW ASFLQELAHR 480 RGADLGIPFE FNAVSADTIN PAELISTTGD EVVAVVLPVG CSARAPPLPA ILRLVKQLGP 540 KIVVAIDHGG DRADLPFSQH FLNCFQSCVF LLDSLDAAGI DADSACKIEK FLIQPRIEDA 600 VLGRGKVDKP MAWRSAFTAA GFAPVPPSNL AEAQADCLLK RVQVRGFHVE KCGVGLTLYW 660 QRGELVTVSA WRC*

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence Send to blast

MRAALFGAER NGAADLGGGG KALYWPEGKA KALVEPRSVL DCTRSPSPNN STSTLSSSLG  60
GGGGADSTGV AAVSDSSAAA AAEATKWGAP GERGGGGKED WAGGCELPPI PAGLDMGLVG  120
GDSWDAVLGN AAAAGQDQTF LNWIIGAAGD LDQPGPPLPV HQQPLLDNAA FGFPAADPLG  180
FSLDPHLGGV ASDMSSPGAV SHTTNSGGGS KVSSAFGLFS TESASLQPPP PPVLFHEGID  240
TKPPLLGAQP PGPLLHQFQH QPPPATTFFM PLPSFPDHNQ QSPLLQPPPK RHQSMGDDLY  300
LARNRAAAAA QGLPFPPLHG PAPFQLQPSP PPPQGAMKTT AAEAAQQQLL DELAAAAKAA  360
EAGNSIGARE ILARLNHQLP PLGKPFLRSA SYLKEALLLA LAEGYHGACR LTSPLDVALK  420
LAAYKSFSDL SPVLQFTNFT ATQALLDETA GSTASCIHVI DFDLGVGGQW ASFLQELAHR  480
RGADLGIPFE FNAVSADTIN PAELISTTGD EVVAVVLPVG CSARAPPLPA ILRLVKQLGP  540
KIVVAIDHGG DRADLPFSQH FLNCFQSCVF LLDSLDAAGI DADSACKIEK FLIQPRIEDA  600
VLGRGKVDKP MAWRSAFTAA GFAPVPPSNL AEAQADCLLK RVQVRGFHVE KCGVGLTLYW  660
QRGELVTVSA WRC*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.22431	0.0	callus\| leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG431100.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT063504	0.0	BT063504.1 Zea mays full-length cDNA clone ZM_BFc0070G06 mRNA, complete cds.
GenBank	KJ727939	0.0	KJ727939.1 Zea mays clone pUT6034 GRAS transcription factor (GRAS80) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022682654.1	0.0	scarecrow-like protein 27
TrEMBL	A0A368PPT9	0.0	A0A368PPT9_SETIT; Uncharacterized protein
STRING	Si016508m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	5e-70	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pavir.1KG431100.2.p