PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG431100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 710aa    MW: 73591.5 Da    PI: 5.7976
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG431100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS276.86.6e-853517083374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          + L ++A+a ++g+   a+++Larl+++  p g+p+ R a+y++eAL   la+         +++ ts+ +++ +laa+k fs++sP+l+
  Pavir.1KG431100.1.p 351 DELAAAAKAAEAGNSIGAREILARLNHQLPPLGKPFLRSASYLKEALLLALAE-----GYHGACRLTSPLDVALKLAAYKSFSDLSPVLQ 435
                          7899************************************************9.....33457778888889****************** PP

                 GRAS  93 fshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                          f+++ta qa+l++++g+  +++H+iDfd++ G+QW+++lq+La R+    +  p +++T+++s++s++  el+ t++++a+fA+ lg+pf
  Pavir.1KG431100.1.p 436 FTNFTATQALLDETAGStaSCIHVIDFDLGVGGQWASFLQELAHRRgaggAALPFVKLTAFVSAASHHPLELRLTRDNIAQFAADLGIPF 525
                          ***************998899************************977555589************************************ PP

                 GRAS 177 efnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                          efn++   + +++++ eL   + +E++aV l +          +     +++L+lvk+l Pk+vv +++  d+ + +F ++fl++++ ++
  Pavir.1KG431100.1.p 526 EFNAV---SADTINPAELISTTgDEVVAVVLPVGCSARA---PP----LPAILRLVKQLGPKIVVAIDHGGDRADLPFSQHFLNCFQSCV 605
                          ****8...7788999888666569*******99776665...44....556*************************************** PP

                 GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                           l+dsl+a  + +++ + k+E++l++++i+++v  +g+       + + Wr+++++aGF pvp s+ a++qa++ll++v+++g++ve+  
  Pavir.1KG431100.1.p 606 FLLDSLDAA-GIDADSACKIEKFLIQPRIEDAVLGRGKV-----DKPMAWRSAFTAAGFAPVPPSNLAEAQADCLLKRVQVRGFHVEKCG 689
                          ******888.7899*********************9997.....8899****************************************** PP

                 GRAS 356 gslvlgWkdrpLvsvSaWr 374
                            l+l+W++ +Lv+vSaWr
  Pavir.1KG431100.1.p 690 VGLTLYWQRGELVTVSAWR 708
                          ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.156323688IPR005202Transcription factor GRAS
PfamPF035142.3E-82351708IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MRAALFGAER NGAADLGGGG KALYWPEGKA KALVEPRSVL DCTRSPSPNN STSTLSSSLG  60
GGGGADSTGV AAVSDSSAAA AAEATKWGAP GERGGGGKED WAGGCELPPI PAGLDMGLVG  120
GDSWDAVLGN AAAAGQDQTF LNWIIGAAGD LDQPGPPLPV HQQPLLDNAA FGFPAADPLG  180
FSLDPHLGGV ASDMSSPGAV SHTTNSGGGS KVSSAFGLFS TESASLQPPP PPVLFHEGID  240
TKPPLLGAQP PGPLLHQFQH QPPPATTFFM PLPSFPDHNQ QSPLLQPPPK RHQSMGDDLY  300
LARNRAAAAA QGLPFPPLHG PAPFQLQPSP PPPQGAMKTT AAEAAQQQLL DELAAAAKAA  360
EAGNSIGARE ILARLNHQLP PLGKPFLRSA SYLKEALLLA LAEGYHGACR LTSPLDVALK  420
LAAYKSFSDL SPVLQFTNFT ATQALLDETA GSTASCIHVI DFDLGVGGQW ASFLQELAHR  480
RGAGGAALPF VKLTAFVSAA SHHPLELRLT RDNIAQFAAD LGIPFEFNAV SADTINPAEL  540
ISTTGDEVVA VVLPVGCSAR APPLPAILRL VKQLGPKIVV AIDHGGDRAD LPFSQHFLNC  600
FQSCVFLLDS LDAAGIDADS ACKIEKFLIQ PRIEDAVLGR GKVDKPMAWR SAFTAAGFAP  660
VPPSNLAEAQ ADCLLKRVQV RGFHVEKCGV GLTLYWQRGE LVTVSAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-2342470880375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.224310.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG431100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0635040.0BT063504.1 Zea mays full-length cDNA clone ZM_BFc0070G06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682654.10.0scarecrow-like protein 27
TrEMBLA0A368PPT90.0A0A368PPT9_SETIT; Uncharacterized protein
STRINGSi016508m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.16e-83GRAS family protein