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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.1KG418500.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
ERF |
Protein Properties |
Length: 327aa MW: 34286.3 Da PI: 6.251 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.1KG418500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 64.4 | 2.3e-20 | 145 | 196 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
+y+GVr+++ +g+++AeIrdp+++g r++lg+++ta eAa+a+++a+ +++g+
Pavir.1KG418500.1.p 145 KYRGVRQRP-WGKFAAEIRDPKKRG--SRVWLGTYDTAIEAARAYDRAAFRMRGA 196
8********.***********8876..**************************95 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009409 | Biological Process | response to cold |
GO:0010200 | Biological Process | response to chitin |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 327 aa
Download sequence Send
to blast |
MDFSGEIDDF NLQFIHDQLL GGEACLPVVN VPGAAAYSAP PSVHPAAQAA FQHPAAFVPP 60 PPQQQQQAAA YVDLTNEYAD AAAGAAFRAE PVMIRFGGEP SPVSDPDRRP LLTISLPPTS 120 HAWGPAAGAP LAAAAAALDA NDFRKYRGVR QRPWGKFAAE IRDPKKRGSR VWLGTYDTAI 180 EAARAYDRAA FRMRGAKAIL NFPNEVGSRG ADFLAPPPPP QTSSQNKRKL AHDAAAEAEL 240 AAAKSVKAEA FGSPASSLTS SQSPATTTAS TVTATSSSSS EAGAAEMFLS FPMTPSTSSW 300 TWEQMFGSLS PLSPHPQLGF PEVTVN*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT084056 | 1e-172 | BT084056.1 Zea mays full-length cDNA clone ZM_BFb0069B11 mRNA, complete cds. |