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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG373400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 244aa MW: 26923.6 Da PI: 8.0049 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.3 | 1.5e-07 | 88 | 150 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqk 46 r++WT+eE ++lv a + Wk+I ++++ +Rt qcksr+ k Pavir.1KG373400.1.p 88 RMNWTKEENLKLVSAWLHNSVDsvkgnaqkednFWKKIVAEFNssvsvdRKRTVSQCKSRYTK 150 799*************999999***************************99**********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.0E-4 | 87 | 154 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.47 | 88 | 152 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-4 | 88 | 151 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.25E-4 | 90 | 150 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MPPYPPFGGF HHSSPYEANY NFSSSAFGRG TPSEGGQSSS PVESMAFGPG GAGSSLASPI 60 SPAPQNNNDV ASTQVWSDNS DDGKKGGRMN WTKEENLKLV SAWLHNSVDS VKGNAQKEDN 120 FWKKIVAEFN SSVSVDRKRT VSQCKSRYTK TNKLIVHFNG CWIRMKRAHD SGESDDQIMG 180 NLMQSDNQDL HMSKRVKHTE SGAYTSSTQD NEEVEPHERS RQKKAKDRLK GKETKCCQEG 240 EEL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG373400.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3L6Q4H6 | 8e-69 | A0A3L6Q4H6_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J18042.1.p | 1e-71 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP449 | 6 | 10 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG373400.1.p |