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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.1KG361200.4.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
HD-ZIP |
Protein Properties |
Length: 321aa MW: 34977.2 Da PI: 6.5094 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.1KG361200.4.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 58.6 | 1.1e-18 | 155 | 209 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Le+ F+ +++++ +++ +LAk+l+L rqV vWFqNrRa+ k
Pavir.1KG361200.4.p 155 RKKLRLSKEQSALLEDSFKGHSTLTPKQKSDLAKQLKLRPRQVEVWFQNRRARTK 209
678899***********************************************98 PP
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2 | HD-ZIP_I/II | 125.5 | 2.4e-40 | 155 | 244 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
+kk+rlskeq++lLE+sF+ +++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+++al++en+rL++ev+eLr +
Pavir.1KG361200.4.p 155 RKKLRLSKEQSALLEDSFKGHSTLTPKQKSDLAKQLKLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCEALAQENRRLHREVAELR-A 243
69*************************************************************************************9.5 PP
HD-ZIP_I/II 91 l 91
l
Pavir.1KG361200.4.p 244 L 244
5 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 321 aa
Download sequence Send
to blast |
MELELSLGDS PALAKCTSTP MLTPTYAGKE DHELVLELGV GTAKRTEQDN QKTPKQPGED 60 AQDQEDDGEA CFRSESPVEL SLGCPLLPAS AETGSANSEE CRRGFEVNTV VVDGESAQGR 120 SLSTSSLPRE VSVRQAADQE AAEDEENSGV GRGVRKKLRL SKEQSALLED SFKGHSTLTP 180 KQKSDLAKQL KLRPRQVEVW FQNRRARTKL KQTEVDCEYL KRCCEALAQE NRRLHREVAE 240 LRALRTAPYP FYGHLPAAGF STACVCPSCD DKVIAAHHSS ITATSLAVPP PSPVSTLFAR 300 PHFGPFTIHP VLRRQPSATS *
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 203 | 211 | RRARTKLKQ |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |