 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pavir.1KG361200.2.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 360aa MW: 38905.6 Da PI: 8.1168 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.1KG361200.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 50.7 | 3e-16 | 195 | 248 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Le+ F+ +++++ ++ +LAk+l+L rqV vWFqNrRa+ k
Pavir.1KG361200.2.p 195 RKKLRLSKEQSALLEDSFKGHSTLTP-QKSDLAKQLKLRPRQVEVWFQNRRARTK 248
678899******************97.5799**********************98 PP
|
| 2 | HD-ZIP_I/II | 118.1 | 5e-38 | 195 | 283 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
+kk+rlskeq++lLE+sF+ +++L+p +K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+++al++en+rL++ev+eLr +
Pavir.1KG361200.2.p 195 RKKLRLSKEQSALLEDSFKGHSTLTP-QKSDLAKQLKLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCEALAQENRRLHREVAELR-A 282
69**********************99.699*********************************************************9.5 PP
HD-ZIP_I/II 91 l 91
l
Pavir.1KG361200.2.p 283 L 283
5 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 360 aa
Download sequence Send
to blast |
MRSFLRPTKT HSSSPARPPR RPGRWCAAPA ADQSNPASAP PHRPPASPST PPSGPSDPAA 60
PLVLLAAGKE DHELVLELGV GTAKRTEQDN QKTPKQPGED AQDQEDDGEA CFRSESPVEL 120
SLGCPLLPAS AETGSANSEE CRRGFEVNTV VVDGESAQGR SLSTSSLPRE VSVRQAADQE 180
AAEDEENSGV GRGVRKKLRL SKEQSALLED SFKGHSTLTP QKSDLAKQLK LRPRQVEVWF 240
QNRRARTKLK QTEVDCEYLK RCCEALAQEN RRLHREVAEL RALRTAPYPF YGHLPAAGFS 300
TACVCPSCDD KVIAAHHSSI TATSLAVPPP SPVSTLFARP HFGPFTIHPV LRRQPSATS*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 242 | 250 | RRARTKLKQ |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
