PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG344400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family EIL
Protein Properties Length: 571aa    MW: 61814.9 Da    PI: 6.045
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG344400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3353.73.8e-1081694592283
                          XXXXXXXXXXXXXXXXXXXXXX..XXXXX...............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaa..............tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgii 77 
                          elk+rmwkdqmll++l++r     + + ++              + a +++ ++ + rrk+m raQDg+L++Mlk+me+cna+GfvYg i
  Pavir.1KG344400.1.p 169 ELKRRMWKDQMLLNKLEGRAGAFRAGAGPSssrplappgagadgLLAGEEESPEVRCRRKAMLRAQDGVLRHMLKMMEACNARGFVYGVI 258
                          9********************9988877766666666666666645555559999*********************************** PP

                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT- CS
                 EIN3  78 pekgkpvegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekg 167
                          +e g+p++g+sdsLr+WWk++v+fdr+gp+a +        ++ges l     s  h+l+++qD+tlgS+Lsal+qhc+ppqr+fple+g
  Pavir.1KG344400.1.p 259 DEAGEPMSGSSDSLRGWWKDNVSFDRAGPMAFITG------PAGESPL--GIASCLHRLQDIQDSTLGSVLSALIQHCQPPQRSFPLERG 340
                          *******************************9988......5677777..458899********************************** PP

                          -HHHH---S--HHHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT- CS
                 EIN3 168 vepPWWPtGkelwwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeeke 256
                          ++pPWWPtG+e+wwg++g ++++qg ppy+kphdlkkawk+s+L+avikhmsp+++++r+l++qsk+lq+kms ke+ +++++++qee +
  Pavir.1KG344400.1.p 341 LAPPWWPTGHEAWWGSQGeVQAHQGVPPYRKPHDLKKAWKISLLSAVIKHMSPRFDQMRKLVWQSKRLQQKMSVKETETWSKIIKQEEVL 430
                          ****************************************************************************************** PP

                          S--XXXXXX..XXXXXXXXXXXXXXXXXX CS
                 EIN3 257 catvsahss..slrkqspkvtlsceqked 283
                           ++++++ +   l +++ +  ++++ k++
  Pavir.1KG344400.1.p 431 SRRLKSSLPitPLDDDDMASRAHDKRKRE 459
                          ****9996533444444444444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.8E-111169428No hitNo description
Gene3DG3DSA:1.10.3180.103.9E-63303436IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167683.92E-55306430IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MVARAPFPSR RLRPSFGHPH GPVAAEPRHE PRHLPPQTPG GGHHLENGAV AVVPPAGELD  60
LRGVVDAVPP DVLFDLIGSC SGLDDIIIIY RPCQVRRAPT TRARACLLER ASMSHGIHGR  120
RHPFSEAAME HDVAHGGGGG AGEAFDEPEL EQEELSDSES GAESIDISEL KRRMWKDQML  180
LNKLEGRAGA FRAGAGPSSS RPLAPPGAGA DGLLAGEEES PEVRCRRKAM LRAQDGVLRH  240
MLKMMEACNA RGFVYGVIDE AGEPMSGSSD SLRGWWKDNV SFDRAGPMAF ITGPAGESPL  300
GIASCLHRLQ DIQDSTLGSV LSALIQHCQP PQRSFPLERG LAPPWWPTGH EAWWGSQGEV  360
QAHQGVPPYR KPHDLKKAWK ISLLSAVIKH MSPRFDQMRK LVWQSKRLQQ KMSVKETETW  420
SKIIKQEEVL SRRLKSSLPI TPLDDDDMAS RAHDKRKREL ISTSDSSGGS TSSSGELAVV  480
LPPELAGLLA EDESLSPIDE LAKLYCYSHG PDAADQGGGH HLENGAVAVV PPAGELDLRG  540
VVDAVPPDVL FDLIGSFSGL DDVFRLMEED *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A1e-473044341130Protein ETHYLENE INSENSITIVE 3
4zds_B1e-473044341130Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG344400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269670.0KJ726967.1 Zea mays clone pUT3668 EIL transcription factor (EIL5) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797229.10.0putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A3L6RQ530.0A0A3L6RQ53_PANMI; ETHYLENE INSENSITIVE 3-like 5 protein
STRINGPavir.Ab01993.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.18e-87EIL family protein