PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG341000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 389aa    MW: 41493.9 Da    PI: 7.7548
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG341000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.13e-1556137286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          W++  + +Li+a  e+  +l+rg+l+ p+W+ev++++ ++ g+    rs +qCk++++ l+k+yk +k+ + +       ++pyfd+l+
  Pavir.1KG341000.1.p  56 WSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYskgPRSDIQCKNRIDTLKKKYKVEKAKRAS-------SWPYFDRLD 137
                          *************************************87788833346779***************9999886.......5******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.9E-2454139No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MDDDGAASAS PSPSPSPLPV ADPVTVAAAP PGHVAVAIPL RKPSPSSGGG GREDAWSDGA  60
TSTLIDAWGE RFVALGRGSL RHPQWQEVAE VVSSRDGYSK GPRSDIQCKN RIDTLKKKYK  120
VEKAKRASSW PYFDRLDDLL APVYKPNSSS SSAAAAARSA PTLMVPPRIN FPQRTRTPLQ  180
PSAGFKRRMP SPPPQASASS DSSDGFPPEP LSALANGKRQ RLEEPTPAAA NGAESSSSSR  240
VQGLRDLAQA IRRLGEVYER VESAKREQEL RMEQERLEAA RELEEQRVEF FLKMQVELSK  300
ATGSGGAAPV AVPIPADGSG ARRTGMTAEV ATSSNHRVRY RIKGSMHHQA AQQPPHYQNN  360
AAASGGNGSD SDKKEAEGDA EDEEEESQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG341000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815450.10.0trihelix transcription factor ASIL2-like
TrEMBLA0A2S3GQF30.0A0A2S3GQF3_9POAL; Uncharacterized protein
STRINGPavir.J27535.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.12e-27sequence-specific DNA binding transcription factors