PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG332700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 351aa    MW: 39392.1 Da    PI: 7.5918
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG332700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00046587323
                         ET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                         C+   Cgk+F +   L++H  +H
  Pavir.1KG332700.1.p 65 CSyeGCGKTFFDAGALRKHAHVH 87
                         77779**************9887 PP
2zf-C2H215.16.5e-0592116123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          y C+  +Cgk F ++s LkrH   H
  Pavir.1KG332700.1.p  92 YICHyeNCGKKFLDSSKLKRHFLIH 116
                          89*******************8877 PP
3zf-C2H221.84.9e-07122146123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          ++Cp   Cgk Fs   nLk H++tH
  Pavir.1KG332700.1.p 122 FVCPheGCGKAFSLDFNLKAHMKTH 146
                          89**********************9 PP
4zf-C2H219.23.3e-06152177123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                          ++C+   Cg++F++ s L+ Hir  H
  Pavir.1KG332700.1.p 152 HVCQypECGRRFTQESKLRAHIRAqH 177
                          689999*****************888 PP
5zf-C2H215.54.8e-05221246123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                          y+Cp   C+k + + + L+ H+++ H
  Pavir.1KG332700.1.p 221 YVCPyeGCDKAYIHEYKLNLHLKKeH 246
                          99*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.3E-135989IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.7626392IPR007087Zinc finger, C2H2
SMARTSM003550.00326387IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.01E-66488No hitNo description
PROSITE patternPS0002806587IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.3E-1490112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.06692121IPR007087Zinc finger, C2H2
SMARTSM003550.01392116IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094116IPR007087Zinc finger, C2H2
SuperFamilySSF576672.71E-14103155No hitNo description
Gene3DG3DSA:3.30.160.604.2E-20113149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.321122151IPR007087Zinc finger, C2H2
SMARTSM003554.3E-4122146IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280124146IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-8151174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.24152177IPR007087Zinc finger, C2H2
SMARTSM003550.0047152177IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.82E-7154177No hitNo description
PROSITE patternPS000280154177IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-9213243IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.82E-7216243No hitNo description
PROSITE profilePS501578.891221251IPR007087Zinc finger, C2H2
SMARTSM003550.0028221246IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280223246IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MQAAARRRFR WVKEWVPQDL VVAGGPCALF KWVREDRLAA LKAKDKEQGA ESAIPEPNTE  60
VLFLCSYEGC GKTFFDAGAL RKHAHVHGER QYICHYENCG KKFLDSSKLK RHFLIHTGEK  120
NFVCPHEGCG KAFSLDFNLK AHMKTHSADN YHVCQYPECG RRFTQESKLR AHIRAQHEKV  180
VGLQNPGPST VNHSALGDYR QPPKPVKVSA TPPAPSAERP YVCPYEGCDK AYIHEYKLNL  240
HLKKEHPNHY QDGGPQGAAP SSKRSISKSS NRSKPDVLAG MPPTKIPKRK GGYAAPLPAV  300
SVPEEHQWSR KVAYEDDSEE TEEEGDNDVE DGWRYNKAAS SDDEETEDEE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C4e-34561732114PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.153440.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Rapidly induced following seed germination, especially in tender cotyledons. {ECO:0000269|PubMed:26961720}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers, to a lower extent in seedlings, stems and leaves, and, at low levels, in roots and senescent leaves. {ECO:0000269|PubMed:26961720}.
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG332700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810580.10.0zinc finger transcription factor YY1
SwissprotQ2V3L31e-105YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A2T7F7J30.0A0A2T7F7J3_9POAL; Uncharacterized protein
STRINGPavir.Ab01903.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-104C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]