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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG325000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 323aa MW: 33444.9 Da PI: 9.0677 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.5 | 1.5e-10 | 117 | 165 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +ah Er RR+r+++ f +L l+P+ s+K++Ka+ + +++++Ik L+ Pavir.1KG325000.1.p 117 KAHIVTERERRKRMKDLFTNLHALMPHV----SEKVDKATLVGETIHFIKALE 165 6899***********************8....7*****************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.595 | 114 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.51E-13 | 116 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.16E-10 | 117 | 166 | No hit | No description |
Pfam | PF00010 | 4.5E-8 | 117 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.5E-13 | 118 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-6 | 120 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.589 | 249 | 322 | IPR002912 | ACT domain |
CDD | cd02116 | 0.0023 | 250 | 299 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MAQNGPHDHH QGAAASDERS FTPPTTMTFL GPAETHTGGS RIGSPVGMNA SKGKDVVLPN 60 AVQGGEHGSA GGGEANADKS KGKHPAAREA AATDAAGHGL PKGKGSMAAA DDGGDAKAHI 120 VTERERRKRM KDLFTNLHAL MPHVSEKVDK ATLVGETIHF IKALEQTKAQ LERRKQEQAL 180 ARQAAAEAAV SALLSAPQTA PGMAAMSNGW GPAVPPQQQP LAAAATGPAG FQTWSAPNVA 240 LSVSNEKAII SVCLPRQPRM LTLVMSVLSK HGIDVITVHV AADGPRSLIN IYTRVNVAGG 300 ESPSAEDIYK LAVSEIMVWL TT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG325000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821631.1 | 1e-175 | transcription factor bHLH95-like | ||||
TrEMBL | A0A3L6RQ13 | 1e-176 | A0A3L6RQ13_PANMI; Transcription factor bHLH95-like | ||||
STRING | Pavir.Ab01880.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2005 | 36 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 3e-14 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG325000.1.p |