PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG324200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 696aa    MW: 80007.9 Da    PI: 9.4081
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG324200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.11.4e-231299290
                 FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                         +Yn+YAk++GFs+++  sk+  ++ge  k  fvC+++g+++e ++   +k+r+++++++tgC a+l+vkk+ + kw+vt++++ HnH+l+
  Pavir.1KG324200.1.p 12 YYNKYAKKTGFSIKIGGSKND-KDGEKDKVMFVCNRNGSNQEVSEGpVVKQRKRNKTEKTGCMARLTVKKR-RLKWHVTTFNEYHNHPLC 99
                         9***************98876.8899****************998878999999*****************.9****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.3E-221299IPR004330FAR1 DNA binding domain
PfamPF105514.5E-31221314IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MVFDSCEQAR SYYNKYAKKT GFSIKIGGSK NDKDGEKDKV MFVCNRNGSN QEVSEGPVVK  60
QRKRNKTEKT GCMARLTVKK RRLKWHVTTF NEYHNHPLCE KFELRRFLRS HRGIPEEEKK  120
FVQLLHDANI SSGRVMQIMA EIYGGHKFAL FNSKDISNYK AKLGRGTKYK DMAETLSYFE  180
ELKKNDPNFY YKIDLDANDQ VRNLFWANGA ARAAYKEFGD CVSFDTTYMT NRYKMPFAPF  240
IGINNHGMSI QMGCGFMKDE TIESFTWLFN KFQDAMENVA PSTIISYQDQ AMGAAIAAVF  300
PNTIHRNCRW HIVNKVQGPL GSYLTSKPGP ASELNECMDY SVSEAEYEAR WAAVIEKYKA  360
HENKHLQFLY ELRRLYIPAY YMESFFPFLQ STARSEGFNA VLKRYVNPQM SILNFVQQYV  420
KIQEKITSVE DENEFTSSEK VPSGLFSGYP FEEQVCKFYT RSIYFKFQRE LKLSTSYKIT  480
NVSGYTYTLV PTKGFVFGYG TREYKVFADV DSKSYVCECS KMKRDGIVYI DEIPQEYLLR  540
RWSNEVGMIP NASAANEAQK QPENETGNES QALKTIRYAD LCNEFGKIAK EASTNEKTTE  600
IVRKHLIEIK TDVVAFKEKN SKRQKIVATQ GNTNQDQTSS LDVNDPPASK PKERPVSTRI  660
KPGFNLQGKP KNIKCRICGS NEHTTNKCDN RLGKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16181RKRNKTEKTGCMARLTVKKRR
26183RKRNKTEKTGCMARLTVKKRRLK
37883KKRRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG324200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6PZU30.0A0A3L6PZU3_PANMI; Uncharacterized protein
STRINGPavir.J31320.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-87FAR1-related sequence 5