PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG322300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 252aa    MW: 26877.8 Da    PI: 10.0731
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG322300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.81.4e-181053245
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         ri n+s r  t+ kRr+g++KKA+EL +LCd++v+v+++  +g+
  Pavir.1KG322300.1.p 10 RIANDSTRRATLKKRRKGLMKKASELATLCDVDVLVVVYDGRGE 53
                         89*************************************88876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.554153IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.06E-20188IPR002100Transcription factor, MADS-box
SMARTSM004327.2E-21162IPR002100Transcription factor, MADS-box
CDDcd002666.88E-20285No hitNo description
PRINTSPR004047.3E-13323IPR002100Transcription factor, MADS-box
PfamPF003193.3E-181053IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-132338IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-133859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MARKKVALQR IANDSTRRAT LKKRRKGLMK KASELATLCD VDVLVVVYDG RGEARPPEVW  60
PEAPVEAERV AARFKAVPEL DQCKKKQDMR ALLTQRNDKL RDQLRKARHE NRERERALLL  120
HDAIAGRRPG LAGLSVEEVA ALGLVVEQRI QTVMDAIARL QLQGEGHDLP AATSSALAPC  180
GTGAGAGHRD MMMQAPDPQG GWMVAGGDNG ALAYNGFAVG AGAGGDMPPQ FSGMGGFGFA  240
GLDAGRSFPS M*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVALQRIANDSTRRATLKKRR
22125KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG322300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821492.11e-116agamous-like MADS-box protein AGL80
TrEMBLA0A2T7F7C31e-123A0A2T7F7C3_9POAL; Uncharacterized protein
STRINGPavir.Ab01824.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-10AGAMOUS-like 80