PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG297000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 352aa MW: 37428.2 Da PI: 5.0677

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG297000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.3	5.5e-20	75	135	23	86
trihelix 23 rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 ++++ +p+W++v++++r++g+er+p+qC+++w+nl+++ykkike+e+ + s+ p f ++ Pavir.1KG297000.1.p 75 AAAALEPKWAAVAEYCRRHGVERGPVQCRKRWSNLAGDYKKIKEWERAA---AASREPSFWAMR 135 455669*****************************************86...333557777775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-9	82	134	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MSNAGDPAGA AAAAATRRGA RRGCRGGRGR RYWCSSRANA WWRAAAGAAG GAGLAAAAAA 60 AAAAASASGG EASAAAAALE PKWAAVAEYC RRHGVERGPV QCRKRWSNLA GDYKKIKEWE 120 RAAAASREPS FWAMRNDARR ERRLPGFFDR EVYDILEGRG RAILASRSAG NAAEEEEAVA 180 AARVEEEKEA GPAEAVFDSG RPATEEALFS EDEEEEEEEA PAAAPPPLPP QAVIAVPVSE 240 KPEASRQQQS AEQAGTSKDK QPEQSTERDA PSQQGGQKRP RTDEEAGEGT TDLQSKLIEI 300 LDRNSRMVAA QLEAQNQNCE LDREQRKDQA NSLVLVLGRL ADALGRIADK L*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MSNAGDPAGA AAAAATRRGA RRGCRGGRGR RYWCSSRANA WWRAAAGAAG GAGLAAAAAA  60
AAAAASASGG EASAAAAALE PKWAAVAEYC RRHGVERGPV QCRKRWSNLA GDYKKIKEWE  120
RAAAASREPS FWAMRNDARR ERRLPGFFDR EVYDILEGRG RAILASRSAG NAAEEEEAVA  180
AARVEEEKEA GPAEAVFDSG RPATEEALFS EDEEEEEEEA PAAAPPPLPP QAVIAVPVSE  240
KPEASRQQQS AEQAGTSKDK QPEQSTERDA PSQQGGQKRP RTDEEAGEGT TDLQSKLIEI  300
LDRNSRMVAA QLEAQNQNCE LDREQRKDQA NSLVLVLGRL ADALGRIADK L*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.4387	1e-138	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG297000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025798060.1	1e-160	trihelix transcription factor ASR3-like isoform X1
TrEMBL	A0A2T8KW82	1e-159	A0A2T8KW82_9POAL; Uncharacterized protein
STRING	Pavir.Ab01295.1.p	1e-159	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3915	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	6e-38	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pavir.1KG297000.1.p